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garr-1 putative H/ACA ribonucleoprotein complex subunit 1-like protein [ Caenorhabditis elegans ]

Gene ID: 176870, updated on 4-Jan-2025

Summary

Official Symbol
garr-1
Official Full Name
putative H/ACA ribonucleoprotein complex subunit 1-like protein
Primary source
WormBase:WBGene00022046
Locus tag
CELE_Y66H1A.4
See related
AllianceGenome:WB:WBGene00022046
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable box H/ACA snoRNA binding activity. Predicted to be involved in snoRNA guided rRNA pseudouridine synthesis. Predicted to be located in nucleolus. Predicted to be part of box H/ACA snoRNP complex. Orthologous to human GAR1 (GAR1 ribonucleoprotein). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

See garr-1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
2
Sequence:
Chromosome: IV; NC_003282.8 (426168..427204)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene 3'-5' exonuclease eri-1 Neighboring gene Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase daf-18 Neighboring gene Saposin B-type domain-containing protein Neighboring gene ncRNA Neighboring gene Myosin motor domain-containing protein

Interactions

General gene information

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA binding  
enables box H/ACA snoRNA binding  
Process Evidence Code Pubs
involved_in pseudouridine synthesis  
involved_in rRNA processing  
involved_in ribosome biogenesis  
involved_in snoRNA guided rRNA pseudouridine synthesis  
Component Evidence Code Pubs
part_of box H/ACA snoRNP complex  
located_in nucleolus  
located_in nucleus  
part_of ribonucleoprotein complex  

General protein information

Preferred Names
putative H/ACA ribonucleoprotein complex subunit 1-like protein
NP_499927.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    426168..427204
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_067526.4NP_499927.2  putative H/ACA ribonucleoprotein complex subunit 1-like protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_499927.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9TYK1
    Conserved Domains (1) summary
    pfam04410
    Location:52148
    Gar1; Gar1/Naf1 RNA binding region
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