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    CYCD5;1 cyclin d5;1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829917, updated on 18-Sep-2024

    Summary

    Official Symbol
    CYCD5;1
    Official Full Name
    cyclin d5;1
    Primary source
    TAIR:AT4G37630
    Locus tag
    AT4G37630
    See related
    Araport:AT4G37630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    cyclin d5;1; F19F18.120; F19F18_120
    Summary
    core cell cycle genes; a quantitative trait gene for endoreduplication.
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    Genomic context

    See CYCD5;1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (17679168..17681264)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene BTB and TAZ domain protein 5 Neighboring gene pseudo Neighboring gene calcium ATPase 2 Neighboring gene ncRNA

    Interactions

    General gene information

    NM_001342450.1
    NM_119926.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus PubMed 
    located_in nucleus  

    General protein information

    Preferred Names
    cyclin d5;1
    NP_001320153.1
    • cyclin d5;1 (CYCD5;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN D1;1 (TAIR:AT1G70210.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_195478.2
    • cyclin d5;1 (CYCD5;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN D1;1 (TAIR:AT1G70210.1); Has 2916 Blast hits to 2915 proteins in 305 species: Archae - 0; Bacteria - 0; Metazoa - 1359; Fungi - 342; Plants - 911; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17679168..17681264
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342451.1NP_001328589.1  cyclin d5;1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UUR3, A0A1P8B534, A0A384K8C1, A0A7G2F3Z9
      Conserved Domains (2) summary
      cd20543
      Location:71170
      CYCLIN_AtCycD-like_rpt1; first cyclin box found in plant cyclin-delta family
      cd20544
      Location:175227
      CYCLIN_AtCycD-like_rpt2; second cyclin box found in plant cyclin-delta family
    2. NM_119926.5NP_195478.2  cyclin d5;1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195478.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q2V3B2, Q6NMC8, Q9SZF6
      UniProtKB/TrEMBL
      A0A5S9XZI1, A0A654FWD8, A0A7G2F3Z9
      Conserved Domains (2) summary
      cd20543
      Location:71170
      CYCLIN_AtCycD-like_rpt1; first cyclin box found in plant cyclin-delta family
      cd20544
      Location:175272
      CYCLIN_AtCycD-like_rpt2; second cyclin box found in plant cyclin-delta family
    3. NM_001342450.1NP_001320153.1  cyclin d5;1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2H1ZEQ4, A0A7G2F3L7
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