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CDKD1;1 cyclin-dependent kinase D1;1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 843704, updated on 18-Sep-2024

Summary

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Official Symbol
CDKD1;1
Official Full Name
cyclin-dependent kinase D1;1
Primary source
TAIR:AT1G73690
Locus tag
AT1G73690
See related
Araport:AT1G73690
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AT;CDKD;1; CAK3AT; CYCLIN-DEPENDENT KINASE D1; cyclin-dependent kinase D1;1; F25P22.11; F25P22_11
Summary
cyclin dependent kinase activator CDKD;1. Nuclear localization. Involved in cell cycle regulation and cell differentiation.
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Genomic context

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See CDKD1;1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (27714910..27717420)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene MATE efflux family protein Neighboring gene ncRNA Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cyclin-dependent kinase-activating kinases CDKD;1 and CDKD;3 are essential for preserving mitotic activity in Arabidopsis thaliana. Takatsuka H, et al. Plant J, 2015 Jun. PMID 25942995
  2. Control of cell division and transcription by cyclin-dependent kinase-activating kinases in plants. Umeda M, et al. Plant Cell Physiol, 2005 Sep. PMID 16024551
  3. The plant-specific kinase CDKF;1 is involved in activating phosphorylation of cyclin-dependent kinase-activating kinases in Arabidopsis. Shimotohno A, et al. Plant Cell, 2004 Nov. PMID 15486101, Free PMC Article
  4. Functional modules in the Arabidopsis core cell cycle binary protein-protein interaction network. Boruc J, et al. Plant Cell, 2010 Apr. PMID 20407024, Free PMC Article
  5. High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. Koroleva OA, et al. Plant J, 2005 Jan. PMID 15610358

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_106028.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA polymerase II CTD heptapeptide repeat kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables cyclin-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within regulation of cell cycle TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
part_of transcription factor TFIIK complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cyclin-dependent kinase D1;1
NP_177510.1
  • cyclin-dependent kinase D1;1 (CDKD1;1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: cell differentiation, regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: shoot apex, embryo, root, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase D1;3 (TAIR:AT1G18040.1); Has 124523 Blast hits to 123026 proteins in 4314 species: Archae - 100; Bacteria - 13897; Metazoa - 46445; Fungi - 12747; Plants - 30524; Viruses - 425; Other Eukaryotes - 20385 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    27714910..27717420
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106028.4 → NP_177510.1  cyclin-dependent kinase D1;1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177510.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9C9U2
    UniProtKB/TrEMBL
    A0A178W7E4, A0A5S9WU34
    Conserved Domains (1) summary
    cd07841
    Location:10 → 304
    STKc_CDK7; Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9C9U2.1

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