|
| Status |
Public on Jul 16, 2013 |
| Title |
LOC t+ FL_2 |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
DNA isolated from localized t+ FL
|
| Organism |
Homo sapiens |
| Characteristics |
disease state: localized t+ follicular lymphoma
tissue: follicular lymphoma (FL)
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
The DNA isolation protocol is described in Buffart et al., J Pathol. 2007 Jan;211(1):45-51 (PMID 17117405).
|
| Label |
Cy3
|
| Label protocol |
Standard NimbleGen protocol.
|
| |
|
| Channel 2 |
| Source name |
DNA isolated from a pool of 100 healthy individuals
|
| Organism |
Homo sapiens |
| Characteristics |
disease state: healthy
tissue: blood
sample type: reference
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
The DNA isolation protocol is described in Buffart et al., J Pathol. 2007 Jan;211(1):45-51 (PMID 17117405).
|
| Label |
Cy5
|
| Label protocol |
Standard NimbleGen protocol.
|
| |
|
| |
| Hybridization protocol |
Standard NimbleGen protocol.
|
| Scan protocol |
Agilent DNA Microarray scanner G2505B (Agilent Technologies).
|
| Description |
383878A10_CMFS02
|
| Data processing |
Median normalization and dewaving as described in van de Wiel et al. Briefings in Bioinformatics 2011 (PMID 20172948). NimbleScan software version 2.5.16 (Roche NimbleGen).
|
| |
|
| Submission date |
Sep 05, 2012 |
| Last update date |
Jul 16, 2013 |
| Contact name |
Daoud Sie |
| E-mail(s) |
[email protected]
|
| Phone |
+31 20 4442428
|
| Organization name |
Vrije Universiteit Medical Center
|
| Department |
Pathology
|
| Lab |
Microarray Core Facility
|
| Street address |
De Boelelaan 1117
|
| City |
Amsterdam |
| ZIP/Postal code |
1081 HV |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL10197 |
| Series (1) |
| GSE40641 |
Dissecting the grey zone between follicular lymphoma and nodal marginal zone lymphoma using morphological and genetic features |
|
