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Status
Public on Apr 18, 2010
Title
Nimblegen Human 12x135K array [090527_HG18_WG_CGH_v3.1_HX12]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Nimblegen
Manufacture protocol
see manufacturer's web site (http://www.nimblegen.com/ )
Catalog number
090527
Description
12x135K Arrays
Submission date
Mar 17, 2010
Last update date
Jun 17, 2011
Contact name
Daoud Sie
E-mail(s)
[email protected] Phone
+31 20 4442428
Organization name
Vrije Universiteit Medical Center
Department
Pathology
Lab
Microarray Core Facility
Street address
De Boelelaan 1117
City
Amsterdam
ZIP/Postal code
1081 HV
Country
Netherlands
Samples (254)
GSM523595 , GSM745803 , GSM745804 , GSM745805 , GSM745806 , GSM745807
GSM745808 ,
GSM745809 ,
GSM745810 ,
GSM745811 ,
GSM745812 ,
GSM745813 ,
GSM908074 ,
GSM908075 ,
GSM908076 ,
GSM908077 ,
GSM908078 ,
GSM908079 ,
GSM908080 ,
GSM908081 ,
GSM908082 ,
GSM908083 ,
GSM908084 ,
GSM908085 ,
GSM908086 ,
GSM908087 ,
GSM998671 ,
GSM998672 ,
GSM998673 ,
GSM998674 ,
GSM998675 ,
GSM998676 ,
GSM998677 ,
GSM998678 ,
GSM998679 ,
GSM998680 ,
GSM998681 ,
GSM998682 ,
GSM998683 ,
GSM998684 ,
GSM998685 ,
GSM998686 ,
GSM998687 ,
GSM998688 ,
GSM998689 ,
GSM998690 ,
GSM998691 ,
GSM998692 ,
GSM998693 ,
GSM998694 ,
GSM998695 ,
GSM998696 ,
GSM998697 ,
GSM998698 ,
GSM998699 ,
GSM998700 ,
GSM998701 ,
GSM998702 ,
GSM998703 ,
GSM998704 ,
GSM998705 ,
GSM998706 ,
GSM998707 ,
GSM998708 ,
GSM998709 ,
GSM998710 ,
GSM998711 ,
GSM998712 ,
GSM998713 ,
GSM998714 ,
GSM998715 ,
GSM998716 ,
GSM998717 ,
GSM998718 ,
GSM998719 ,
GSM998720 ,
GSM998721 ,
GSM998722 ,
GSM998723 ,
GSM998724 ,
GSM998725 ,
GSM998726 ,
GSM2891526 ,
GSM2891527 ,
GSM2891528 ,
GSM2891529 ,
GSM2891530 ,
GSM2891531 ,
GSM2891532 ,
GSM2891533 ,
GSM2891534 ,
GSM2891535 ,
GSM2891536 ,
GSM2891537 ,
GSM2891538 ,
GSM2891539 ,
GSM2891540 ,
GSM2891541 ,
GSM2891542 ,
GSM2891543 ,
GSM2891544 ,
GSM2891545 ,
GSM2891546 ,
GSM2891547 ,
GSM2891548 ,
GSM2891549 ,
GSM2891550 ,
GSM2891551 ,
GSM2891552 ,
GSM2891553 ,
GSM2891554 ,
GSM2891555 ,
GSM2891556 ,
GSM2891557 ,
GSM2891558 ,
GSM2891559 ,
GSM2891560 ,
GSM2891561 ,
GSM2891562 ,
GSM2891563 ,
GSM2891564 ,
GSM2891565 ,
GSM2891566 ,
GSM2891567 ,
GSM2891568 ,
GSM2891569 ,
GSM2891570 ,
GSM2891571 ,
GSM2891572 ,
GSM2891573 ,
GSM2891574 ,
GSM2891575 ,
GSM2891576 ,
GSM2891577 ,
GSM2891578 ,
GSM2891579 ,
GSM2891580 ,
GSM2891581 ,
GSM2891582 ,
GSM2891583 ,
GSM2891584 ,
GSM2891585 ,
GSM2891586 ,
GSM2891587 ,
GSM2891588 ,
GSM2891589 ,
GSM2891590 ,
GSM2891591 ,
GSM2891592 ,
GSM2891593 ,
GSM2891594 ,
GSM2891595 ,
GSM2891596 ,
GSM2891597 ,
GSM2891598 ,
GSM2891599 ,
GSM2891600 ,
GSM2891601 ,
GSM2891602 ,
GSM2891603 ,
GSM2891604 ,
GSM2891605 ,
GSM2891606 ,
GSM2891607 ,
GSM2891608 ,
GSM2891609 ,
GSM2891610 ,
GSM2891611 ,
GSM2892730 ,
GSM2892731 ,
GSM2892732 ,
GSM2892733 ,
GSM2892734 ,
GSM2892735 ,
GSM2892736 ,
GSM2892737 ,
GSM2892738 ,
GSM2892739 ,
GSM2892740 ,
GSM2892741 ,
GSM2892742 ,
GSM2892743 ,
GSM2892744 ,
GSM2892745 ,
GSM2892746 ,
GSM2892747 ,
GSM2892748 ,
GSM2892749 ,
GSM2892750 ,
GSM2892751 ,
GSM2892752 ,
GSM2892753 ,
GSM2892754 ,
GSM2892755 ,
GSM2892756 ,
GSM2892757 ,
GSM2892758 ,
GSM2892759 ,
GSM2892760 ,
GSM2892761 ,
GSM2892762 ,
GSM2892763 ,
GSM2892764 ,
GSM2892765 ,
GSM2892766 ,
GSM2892767 ,
GSM2892768 ,
GSM2892769 ,
GSM2892770 ,
GSM2892771 ,
GSM2892772 ,
GSM2892773 ,
GSM2892774 ,
GSM2892775 ,
GSM2892776 ,
GSM2892777 ,
GSM2892778 ,
GSM2892779 ,
GSM2892780 ,
GSM2892781 ,
GSM2892782 ,
GSM2892783 ,
GSM2892784 ,
GSM2892785 ,
GSM2892786 ,
GSM2892787 ,
GSM2892788 ,
GSM2892789 ,
GSM3660599 ,
GSM3660600 ,
GSM3660601 ,
GSM3660602 ,
GSM3660603 ,
GSM3660604 ,
GSM3660605 ,
GSM3660606 ,
GSM3660607 ,
GSM3660608 ,
GSM3660609 ,
GSM3660610 ,
GSM3660611 ,
GSM3660612 ,
GSM3660613 ,
GSM3660614 ,
GSM3660615 ,
GSM3660616 ,
GSM3660617 ,
GSM3660618 ,
GSM3660619 ,
GSM3660620 ,
GSM3660621 ,
GSM3660622 ,
GSM3660623 ,
GSM3660624 Series (9)
GSE17047 Candidate driver genes in focal chromosomal aberrations of stage II colon cancer
GSE30120 Three commercial array platforms compared for DNA copy number detection with DNA isolated from FFPE tissue [NimbleGen]
GSE30123 Three commercial array platforms compared for DNA copy number detection with DNA isolated from FFPE tissue
GSE36986 Ten percent of aberrant cells is sufficient for detection of DNA copy number alterations (part 2)
GSE36993 Ten percent of aberrant cells is sufficient for detection of DNA copy number alterations
GSE40641 Dissecting the grey zone between follicular lymphoma and nodal marginal zone lymphoma using morphological and genetic features
GSE108166 Differential clinicopathological and molecular features within late-onset colorectal cancer according to tumor location
GSE108220 Unsupervised Analysis of Array Comparative Genomic Hybridization Data from Early-Onset Colorectal Cancer Reveals Equivalence with Molecular Classification and Phenotypes
GSE128031 Integrated genomic analysis of chromosomal alterations and mutations in B-cell acute lymphoblastic leukemia reveals distinct genetic profiles at relapse
Data table header descriptions ID PROBE_DESIGN_ID Unique key consisting of the DESIGN ID, ROW NUM and COL NUM
CHROMOSOME Chromosome number
SEQUENCE The DNA sequence synthesized on the array
PROBE_CLASS Probe purpose
RANGE_START start point in chromosome
RANGE_END RANGE_GB GeneBank accession number
Data table ID PROBE_DESIGN_ID CHROMOSOME SEQUENCE PROBE_CLASS RANGE_START RANGE_END RANGE_GB CHR13FS021856796
10032_0411_0249
13
AGCAAAGTGAAGTCACGCATTGAACAGGGACGACAGAGAAAAACATGCACGAAGCAAAAA
experimental
21856796
21856855
NC_000013.9 CHR04FS072180734
10032_0413_0249
4
ATGCCTCTGGAAATGCATCATAGGAACAAGGATTGACTGACTCACAAAGGTAGAAAATAA
experimental
72180734
72180793
NC_000004.10 CHR03FS066095189
10032_0415_0249
3
CCAGTGGGAAAATGTTGACAGACTTGCAGAACTTCACTGGAAATCTGAGTTTGAGTCACG
experimental
66095189
66095248
NC_000003.10 CHR12FS092242119
10032_0417_0249
12
CCAAAGCCACATGCTGCTGGTAGTCTCCACTCCTTTGTGCTTGCAATTTCCTCTGCCTAG
experimental
92242119
92242178
NC_000012.10 CHR05FS035789540
10032_0419_0249
5
GAGCGGCTTGACATCATTAATGAGAGCTGGTTACAGGACACTCTTGGAATGACAATGAAC
experimental
35789540
35789599
NC_000005.8 CHR06FS165926946
10032_0421_0249
6
GTCCTGGCTAACAAAGTTGATGGCATGAGTCAGTATTCTGATATGATCAAAAGCAGCACA
experimental
165926946
165927005
NC_000006.10 CHR14FS097106433
10032_0423_0249
14
GACCACGACGATTTCAGACCTAACTCAAGGGAGATGATAAGAATGTAGCAGTCTTTGGTA
experimental
97106433
97106492
NC_000014.7 CHR01FS083884798
10032_0425_0249
1
GACCCCTGATATCAGTTCTACTGTGAATATTGCTCTCCTTTAGAGAGATGGAGCCAAAGT
experimental
83884798
83884857
NC_000001.9 CHR03FS066541534
10032_0427_0249
3
TCTGAGGTTACCTGGATATGGTGCAAACTGCTAGGACTGCTCAAGCGCACTTCTGTGATC
experimental
66541534
66541593
NC_000003.10 CHR02FS190855363
10032_0429_0249
2
CATGGCAGAGAAATAGAAGAGGTACCAGGCACATGTAAAAAGCCCAAAACATAGGAAGCA
experimental
190855363
190855422
NC_000002.10 CHR11FS002675124
10032_0431_0249
11
GACCATCAACCCTATGAGCTACACTAAGTTTTATCACTTCCTACCTGATCCTCACATCCC
experimental
2675124
2675183
NC_000011.8 CHR13FS109459683
10032_0433_0249
13
TTAGTCACTCATAGCCCATGATAACAGAAGAGGTCACTAGTCCCAGCCGTCAAATACAGA
experimental
109459683
109459742
NC_000013.9 CHR04FS149194411
10032_0435_0249
4
TTTGGTATCTGCGTTGTGTACTTGGCACTTGCGTGTGGCCTAATTCGTGCCTTCCTTTGC
experimental
149194411
149194470
NC_000004.10 CHR05FS043445846
10032_0437_0249
5
AACACTTAGGGAATGCCAGTTATTGAGCCATCACAACAAGATAGCCATTTAAGACACCAT
experimental
43445846
43445905
NC_000005.8 CHR11FS092213127
10032_0439_0249
11
TAGAGGATTGTCCCATAGGTGGTTGTGGGAAGCAGCCAAAGATAAGGAACATGACACTTA
experimental
92213127
92213186
NC_000011.8 CHR07FS037465594
10032_0441_0249
7
CATCTGCTCTTAAACTGCACAAATTCCTCAGAGCTCTGAACTGTGGTCCTCCCTTTCTGT
experimental
37465594
37465653
NC_000007.12 CHR03FS053983076
10032_0443_0249
3
AGGCACTAGGAGTTGCTCTCCTCATTCTGCCCACTTGTCACACATTTGTTTAGCATAGTT
experimental
53983076
53983135
NC_000003.10 CHR09FS121569113
10032_0445_0249
9
TCGAGTTAAACCACGAATAGCAAACCCATGGTGTGCCTGCTGTCACCCACCTCCAATCTA
experimental
121569113
121569172
NC_000009.10 CHR12FS122282629
10032_0447_0249
12
ACTGGCAACAGAAATACCTGGATTCCAATCACCATGCTATTACACCAGGAAAACACAAGC
experimental
122282629
122282688
NC_000012.10 CHR15FS068598381
10032_0449_0249
15
TTTTGAGTCTGAGCAGTGAATAGCATGCAGTACACTTAAAATTGGCCCTGTGTTCCGAGA
experimental
68598381
68598440
NC_000015.8
134937 18487 Kbytes .Supplementary file Size Download File type/resource GPL10197_080310_HG18_WG_CGH_v2_HX12.ndf.gz
7.9 Mb
(ftp) (http) NDF
GPL10197_080310_HG18_WG_CGH_v2_HX12.pos.gz
1.0 Mb
(ftp) (http) POS
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