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| Status |
Public on Jan 01, 2007 |
| Title |
#149325 Soybean embryo, RCAT-Angora & Harovinton, Delhi 2003 time course |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
RCAT 70dap D03
|
| Organism |
Glycine max |
| Characteristics |
RCAT-Angora, soybean cultivar with high seed isoflavonoid content
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
RCAT 30dap D03
|
| Organism |
Glycine max |
| Characteristics |
RCAT-Angora, soybean cultivar with high seed isoflavonoid content
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
|
| |
| Description |
Embryo comparison between cultivars of low (Harovinton) and high (RCAT-Angora) seed isoflavonoid content
|
| Data processing |
Arrayvision LRGC scanner layout, background subtracted intensity"
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| |
|
| Submission date |
Feb 02, 2006 |
| Last update date |
May 10, 2006 |
| Contact name |
Sangeeta Dhaubhadel |
| E-mail(s) |
[email protected]
|
| Phone |
519-457-1470 x670
|
| Fax |
519-457-3997
|
| Organization name |
SCPFRC London
|
| Department |
Agriculture & Agrifood Canada
|
| Lab |
Plant Molecular Biology
|
| Street address |
1391 Sandford St
|
| City |
London |
| State/province |
ON |
| ZIP/Postal code |
N5V 4T3 |
| Country |
Canada |
| |
|
| Platform ID |
GPL3015 |
| Series (1) |
| GSE4194 |
Soybean cultivars RCAT-Angora & Harovinton, embryo comparison and development |
|
| Data table header descriptions |
| ID_REF |
rearranged for LRGC scanner |
| CH1-VOL |
Cy3 intensity |
| CH1-Bkgd |
Cy3 background |
| CH1-sVOL |
Cy3 background subtracted intensity |
| CH2-VOL |
Cy5 intensity |
| CH2-Bkgd |
Cy5 background |
| CH2-sVOL |
Cy5 background subtracted intensity |
| RATIO |
CH2-VOL divided by CH1-VOL |
| VALUE |
log2 ratio |
| Data table |
| ID_REF |
CH1-VOL |
CH1-Bkgd |
CH1-sVOL |
CH2-VOL |
CH2-Bkgd |
CH2-sVOL |
RATIO |
VALUE |
| Gm00024cDNA18kA |
35.5724 |
19.801 |
15.771 |
17.0557 |
10.968 |
6.088 |
0.479464416 |
-1.060504346 |
| Gm00120cDNA18kA |
29.1563 |
18.361 |
10.795 |
30.5081 |
10.656 |
19.852 |
1.046363908 |
0.065384684 |
| Gm00216cDNA18kA |
15.4492 |
18.091 |
0 |
12.1207 |
10.406 |
1.715 |
0.784551951 |
-0.350059113 |
| Gm00312cDNA18kA |
52.5539 |
17.741 |
34.813 |
44.7985 |
10.273 |
34.526 |
0.852429601 |
-0.230347403 |
| Gm00012cDNA18kA |
70.4685 |
17.434 |
53.035 |
42.9916 |
10.141 |
32.851 |
0.610082519 |
-0.712923702 |
| Gm00108cDNA18kA |
27.3644 |
17.328 |
10.036 |
14.3084 |
10.086 |
4.222 |
0.522883747 |
-0.935437869 |
| Gm00204cDNA18kA |
36.5221 |
34.754 |
1.768 |
104.0675 |
14.481 |
89.587 |
2.849439107 |
1.510677962 |
| Gm00300cDNA18kA |
53.4527 |
36.124 |
17.328 |
31.4701 |
14.467 |
17.003 |
0.588746686 |
-0.76428106 |
| Gm00408cDNA18kA |
55.5169 |
19.801 |
35.716 |
17.393 |
10.051 |
7.342 |
0.313291989 |
-1.674420217 |
| Gm00504cDNA18kA |
29.4725 |
19.841 |
9.631 |
14.2271 |
10.267 |
3.96 |
0.482724574 |
-1.050727824 |
| Gm00600cDNA18kA |
51.7472 |
19.764 |
31.984 |
27.9812 |
10.602 |
17.379 |
0.540728774 |
-0.887022966 |
| Gm00696cDNA18kA |
25.0046 |
19.118 |
5.886 |
13.4726 |
10.779 |
2.693 |
0.53880486 |
-0.892165231 |
| Gm00396cDNA18kA |
33.3109 |
18.066 |
15.245 |
31.2104 |
10.907 |
20.303 |
0.936942562 |
-0.093967486 |
| Gm00492cDNA18kA |
59.16 |
17.918 |
41.242 |
20.1485 |
11.275 |
8.874 |
0.340576403 |
-1.553949614 |
| Gm00588cDNA18kA |
44.1255 |
17.818 |
26.307 |
25.6012 |
11.948 |
13.653 |
0.580190593 |
-0.785401191 |
| Gm00684cDNA18kA |
51.3647 |
15.994 |
35.371 |
36.2896 |
11.484 |
24.806 |
0.706508555 |
-0.501221064 |
| Gm00792cDNA18kA |
20.5968 |
14.355 |
6.242 |
22.9865 |
10.593 |
12.393 |
1.116022877 |
0.158366601 |
| Gm00888cDNA18kA |
27.8066 |
14.794 |
13.012 |
14.8065 |
10.989 |
3.817 |
0.532481497 |
-0.9091967 |
| Gm00984cDNA18kA |
14.5536 |
15.285 |
0 |
13.7378 |
10.871 |
2.867 |
0.943945141 |
-0.083225078 |
| Gm01080cDNA18kA |
264.9941 |
15.407 |
249.587 |
55.9161 |
10.325 |
45.591 |
0.211008849 |
-2.244624594 |
Total number of rows: 19200
Table truncated, full table size 1528 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM94976.txt.gz |
1.1 Mb |
(ftp)(http) |
TXT |
| GSM94976_Cy3.tif.gz |
80.4 Mb |
(ftp)(http) |
TIFF |
| GSM94976_Cy5.tif.gz |
76.6 Mb |
(ftp)(http) |
TIFF |
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