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| Status |
Public on Jan 01, 2007 |
| Title |
#149324 Soybean embryo, RCAT-Angora & Harovinton, Delhi 2003 time course |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
RCAT 30dap D03
|
| Organism |
Glycine max |
| Characteristics |
RCAT-Angora, soybean cultivar with high seed isoflavonoid content
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
RCAT 70dap D03
|
| Organism |
Glycine max |
| Characteristics |
RCAT-Angora, soybean cultivar with high seed isoflavonoid content
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
|
| |
| Description |
Embryo comparison between cultivars of low (Harovinton) and high (RCAT-Angora) seed isoflavonoid content
|
| Data processing |
Arrayvision LRGC scanner layout, background subtracted intensity"
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| |
|
| Submission date |
Feb 02, 2006 |
| Last update date |
May 10, 2006 |
| Contact name |
Sangeeta Dhaubhadel |
| E-mail(s) |
[email protected]
|
| Phone |
519-457-1470 x670
|
| Fax |
519-457-3997
|
| Organization name |
SCPFRC London
|
| Department |
Agriculture & Agrifood Canada
|
| Lab |
Plant Molecular Biology
|
| Street address |
1391 Sandford St
|
| City |
London |
| State/province |
ON |
| ZIP/Postal code |
N5V 4T3 |
| Country |
Canada |
| |
|
| Platform ID |
GPL3015 |
| Series (1) |
| GSE4194 |
Soybean cultivars RCAT-Angora & Harovinton, embryo comparison and development |
|
| Data table header descriptions |
| ID_REF |
rearranged for LRGC scanner |
| CH1-VOL |
Cy3 intensity |
| CH1-Bkgd |
Cy3 background |
| CH1-sVOL |
Cy3 background subtracted intensity |
| CH2-VOL |
Cy5 intensity |
| CH2-Bkgd |
Cy5 background |
| CH2-sVOL |
Cy5 background subtracted intensity |
| RATIO |
CH2-VOL divided by CH1-VOL |
| VALUE |
log2 ratio |
| Data table |
| ID_REF |
CH1-VOL |
CH1-Bkgd |
CH1-sVOL |
CH2-VOL |
CH2-Bkgd |
CH2-sVOL |
RATIO |
VALUE |
| Gm00024cDNA18kA |
64.1157 |
19.051 |
45.064 |
49.0266 |
23.606 |
25.421 |
0.764658266 |
-0.387112959 |
| Gm00120cDNA18kA |
71.3085 |
18.057 |
53.251 |
46.6981 |
22.813 |
23.885 |
0.654874244 |
-0.610710204 |
| Gm00216cDNA18kA |
19.2579 |
17.285 |
1.972 |
23.4494 |
22.195 |
1.255 |
1.217650938 |
0.284100618 |
| Gm00312cDNA18kA |
118.1325 |
26.07 |
92.062 |
74.2543 |
29.902 |
44.352 |
0.628567922 |
-0.669859447 |
| Gm00012cDNA18kA |
104.9509 |
26.265 |
78.686 |
121.27 |
30.147 |
91.123 |
1.155492711 |
0.20850816 |
| Gm00108cDNA18kA |
29.9024 |
15.879 |
14.023 |
34.991 |
21.236 |
13.755 |
1.170173632 |
0.226722614 |
| Gm00204cDNA18kA |
286.7657 |
15.665 |
271.101 |
39.3563 |
20.699 |
18.657 |
0.137242006 |
-2.865205974 |
| Gm00300cDNA18kA |
38.5593 |
16.918 |
21.641 |
40.9423 |
21.392 |
19.551 |
1.061800914 |
0.086513289 |
| Gm00408cDNA18kA |
37.9316 |
17.202 |
20.73 |
68.5765 |
21.65 |
46.926 |
1.807898955 |
0.854314047 |
| Gm00504cDNA18kA |
26.857 |
17.37 |
9.487 |
35.0017 |
21.827 |
13.174 |
1.303261719 |
0.382126833 |
| Gm00600cDNA18kA |
83.1407 |
17.639 |
65.502 |
103.7039 |
22.297 |
81.407 |
1.247330128 |
0.318843351 |
| Gm00696cDNA18kA |
21.1598 |
17.719 |
3.441 |
32.6228 |
22.007 |
10.615 |
1.541734799 |
0.624554622 |
| Gm00396cDNA18kA |
60.7898 |
17.205 |
43.585 |
39.1574 |
22.435 |
16.723 |
0.644144248 |
-0.634544297 |
| Gm00492cDNA18kA |
30.9282 |
16.088 |
14.84 |
51.3288 |
23.045 |
28.284 |
1.659611617 |
0.730845661 |
| Gm00588cDNA18kA |
53.3073 |
14.767 |
38.54 |
82.2207 |
22.801 |
59.419 |
1.542391005 |
0.625168543 |
| Gm00684cDNA18kA |
70.142 |
13.77 |
56.372 |
109.0423 |
22.118 |
86.924 |
1.554593539 |
0.636537425 |
| Gm00792cDNA18kA |
38.2219 |
14.151 |
24.071 |
26.7483 |
21.71 |
5.039 |
0.699816074 |
-0.514952293 |
| Gm00888cDNA18kA |
21.1226 |
14.111 |
7.012 |
26.6118 |
21.66 |
4.951 |
1.259873311 |
0.333278668 |
| Gm00984cDNA18kA |
17.5825 |
13.428 |
4.155 |
21.7542 |
21.395 |
0.359 |
1.237264325 |
0.307153746 |
| Gm01080cDNA18kA |
189.2518 |
14.098 |
175.154 |
367.4069 |
21.144 |
346.263 |
1.941365419 |
0.957071699 |
Total number of rows: 19200
Table truncated, full table size 1530 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM94975.txt.gz |
1.1 Mb |
(ftp)(http) |
TXT |
| GSM94975_Cy3.tif.gz |
80.7 Mb |
(ftp)(http) |
TIFF |
| GSM94975_Cy5.tif.gz |
81.2 Mb |
(ftp)(http) |
TIFF |
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