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| Status |
Public on Jan 01, 2007 |
| Title |
#150573 Soybean embryo, RCAT-Angora & Harovinton, Delhi 2003 time course |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
RCAT 30dap D03
|
| Organism |
Glycine max |
| Characteristics |
RCAT-Angora, soybean cultivar with high seed isoflavonoid content
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
Hvtn 30dap D03
|
| Organism |
Glycine max |
| Characteristics |
Harovinton, soybean cultivar with low seed isoflavonoid content
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
|
| |
| Description |
Embryo comparison between cultivars of low (Harovinton) and high (RCAT-Angora) seed isoflavonoid content
|
| Data processing |
Arrayvision LRGC scanner layout, background subtracted intensity"
|
| |
|
| Submission date |
Feb 02, 2006 |
| Last update date |
May 10, 2006 |
| Contact name |
Sangeeta Dhaubhadel |
| E-mail(s) |
[email protected]
|
| Phone |
519-457-1470 x670
|
| Fax |
519-457-3997
|
| Organization name |
SCPFRC London
|
| Department |
Agriculture & Agrifood Canada
|
| Lab |
Plant Molecular Biology
|
| Street address |
1391 Sandford St
|
| City |
London |
| State/province |
ON |
| ZIP/Postal code |
N5V 4T3 |
| Country |
Canada |
| |
|
| Platform ID |
GPL3015 |
| Series (1) |
| GSE4194 |
Soybean cultivars RCAT-Angora & Harovinton, embryo comparison and development |
|
| Data table header descriptions |
| ID_REF |
rearranged for LRGC scanner |
| CH1-VOL |
Cy3 intensity |
| CH1-Bkgd |
Cy3 background |
| CH1-sVOL |
Cy3 background subtracted intensity |
| CH2-VOL |
Cy5 intensity |
| CH2-Bkgd |
Cy5 background |
| CH2-sVOL |
Cy5 background subtracted intensity |
| RATIO |
CH2-VOL divided by CH1-VOL |
| VALUE |
log2 ratio |
| Data table |
| ID_REF |
CH1-VOL |
CH1-Bkgd |
CH1-sVOL |
CH2-VOL |
CH2-Bkgd |
CH2-sVOL |
RATIO |
VALUE |
| Gm00024cDNA18kA |
30.262 |
6.334 |
23.928 |
45.4229 |
24.746 |
20.677 |
1.500988038 |
0.585912479 |
| Gm00120cDNA18kA |
15.4048 |
5.589 |
9.815 |
39.3635 |
23.882 |
15.481 |
2.555274979 |
1.353478551 |
| Gm00216cDNA18kA |
7.2694 |
6.485 |
0.784 |
26.3283 |
24.508 |
1.82 |
3.621798223 |
1.856706173 |
| Gm00312cDNA18kA |
34.8124 |
6.87 |
27.942 |
59.0059 |
24.386 |
34.62 |
1.694967885 |
0.761257939 |
| Gm00012cDNA18kA |
24.1602 |
6.356 |
17.804 |
41.5776 |
23.739 |
17.838 |
1.720912906 |
0.783174086 |
| Gm00108cDNA18kA |
11.1505 |
7.003 |
4.148 |
25.186 |
23.373 |
1.813 |
2.258732792 |
1.17551361 |
| Gm00204cDNA18kA |
170.3297 |
7.904 |
162.426 |
122.5809 |
23.747 |
98.834 |
0.719668384 |
-0.474595814 |
| Gm00300cDNA18kA |
28.9478 |
8.564 |
20.384 |
35.0926 |
25.078 |
10.014 |
1.212271744 |
0.277713131 |
| Gm00408cDNA18kA |
22.5626 |
8.749 |
13.814 |
31.9307 |
24.721 |
7.21 |
1.415204808 |
0.501010855 |
| Gm00504cDNA18kA |
12.8413 |
8.406 |
4.435 |
24.2037 |
23.914 |
0.29 |
1.884832533 |
0.914436346 |
| Gm00600cDNA18kA |
11.3763 |
7.566 |
3.81 |
26.0395 |
24.904 |
1.135 |
2.288925222 |
1.194670331 |
| Gm00696cDNA18kA |
8.6141 |
6.817 |
1.798 |
26.1454 |
25.237 |
0.908 |
3.035186497 |
1.601785165 |
| Gm00396cDNA18kA |
20.9222 |
6.212 |
14.711 |
44.2973 |
24.71 |
19.587 |
2.117239105 |
1.082184206 |
| Gm00492cDNA18kA |
12.3105 |
5.422 |
6.889 |
39.5347 |
24.834 |
14.701 |
3.21146176 |
1.683230118 |
| Gm00588cDNA18kA |
6.0433 |
5.216 |
0.827 |
24.9914 |
24.898 |
0.093 |
4.135389605 |
2.048023256 |
| Gm00684cDNA18kA |
6.4249 |
5.123 |
1.302 |
25.6264 |
24.55 |
1.076 |
3.988606827 |
1.995884918 |
| Gm00792cDNA18kA |
7.524 |
5.137 |
2.387 |
27.5346 |
24.721 |
2.813 |
3.659569378 |
1.871673896 |
| Gm00888cDNA18kA |
9.0782 |
5.491 |
3.587 |
27.1474 |
24.661 |
2.486 |
2.990394572 |
1.580335855 |
| Gm00984cDNA18kA |
13.9768 |
5.646 |
8.33 |
29.5716 |
23.764 |
5.808 |
2.115763265 |
1.081178212 |
| Gm01080cDNA18kA |
103.1831 |
6.167 |
97.016 |
89.7548 |
23.568 |
66.186 |
0.869859502 |
-0.201145696 |
Total number of rows: 19200
Table truncated, full table size 1504 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM94967.txt.gz |
1.2 Mb |
(ftp)(http) |
TXT |
| GSM94967_Cy3.tif.gz |
78.8 Mb |
(ftp)(http) |
TIFF |
| GSM94967_Cy5.tif.gz |
80.7 Mb |
(ftp)(http) |
TIFF |
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