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| Status |
Public on Jan 01, 2007 |
| Title |
#150570 Soybean embryo, RCAT-Angora & Harovinton, Delhi 2004 time course |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
Hvtn 60 dap D04
|
| Organism |
Glycine max |
| Characteristics |
Harovinton, soybean cultivar with low seed isoflavonoid content
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
RCAT 60 dap D04
|
| Organism |
Glycine max |
| Characteristics |
RCAT-Angora, soybean cultivar with high seed isoflavonoid content
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
|
| |
| Description |
Embryo comparison between cultivars of low (Harovinton) and high (RCAT-Angora) seed isoflavonoid content
|
| Data processing |
Arrayvision LRGC scanner layout, background subtracted intensity"
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| |
|
| Submission date |
Feb 02, 2006 |
| Last update date |
May 10, 2006 |
| Contact name |
Sangeeta Dhaubhadel |
| E-mail(s) |
[email protected]
|
| Phone |
519-457-1470 x670
|
| Fax |
519-457-3997
|
| Organization name |
SCPFRC London
|
| Department |
Agriculture & Agrifood Canada
|
| Lab |
Plant Molecular Biology
|
| Street address |
1391 Sandford St
|
| City |
London |
| State/province |
ON |
| ZIP/Postal code |
N5V 4T3 |
| Country |
Canada |
| |
|
| Platform ID |
GPL3015 |
| Series (1) |
| GSE4194 |
Soybean cultivars RCAT-Angora & Harovinton, embryo comparison and development |
|
| Data table header descriptions |
| ID_REF |
rearranged for LRGC scanner |
| CH1-VOL |
Cy3 intensity |
| CH1-Bkgd |
Cy3 background |
| CH1-sVOL |
Cy3 background subtracted intensity |
| CH2-VOL |
Cy5 intensity |
| CH2-Bkgd |
Cy5 background |
| CH2-sVOL |
Cy5 background subtracted intensity |
| RATIO |
CH2-VOL divided by CH1-VOL |
| VALUE |
log2 ratio |
| Data table |
| ID_REF |
CH1-VOL |
CH1-Bkgd |
CH1-sVOL |
CH2-VOL |
CH2-Bkgd |
CH2-sVOL |
RATIO |
VALUE |
| Gm00024cDNA18kA |
96.1168 |
11.505 |
84.612 |
142.4801 |
8.089 |
134.391 |
1.482364165 |
0.567899911 |
| Gm00120cDNA18kA |
53.2753 |
10.939 |
42.336 |
79.0482 |
7.928 |
71.12 |
1.483768275 |
0.569265799 |
| Gm00216cDNA18kA |
17.9873 |
10.492 |
7.496 |
16.0237 |
8.025 |
7.999 |
0.890834088 |
-0.16677133 |
| Gm00312cDNA18kA |
59.8805 |
10.532 |
49.349 |
95.6502 |
8.002 |
87.648 |
1.597351392 |
0.675681717 |
| Gm00012cDNA18kA |
74.7287 |
10.503 |
64.226 |
129.9816 |
7.882 |
122.1 |
1.739379917 |
0.798573082 |
| Gm00108cDNA18kA |
26.4177 |
10.516 |
15.902 |
27.3834 |
7.922 |
19.462 |
1.036555037 |
0.05179672 |
| Gm00204cDNA18kA |
54.5975 |
10.423 |
44.175 |
97.2946 |
8 |
89.295 |
1.782033976 |
0.833524843 |
| Gm00300cDNA18kA |
41.9464 |
10.415 |
31.531 |
67.6766 |
8.091 |
59.586 |
1.613406633 |
0.690110092 |
| Gm00408cDNA18kA |
22.7405 |
10.457 |
12.284 |
29.9694 |
8.213 |
21.757 |
1.31788659 |
0.398226225 |
| Gm00504cDNA18kA |
21.8162 |
10.17 |
11.646 |
20.7155 |
8.161 |
12.554 |
0.949546667 |
-0.074689189 |
| Gm00600cDNA18kA |
52.0986 |
10.272 |
41.827 |
99.7972 |
8.031 |
91.766 |
1.915544756 |
0.937754734 |
| Gm00696cDNA18kA |
22.79 |
10.997 |
11.793 |
24.4356 |
8.307 |
16.128 |
1.072207108 |
0.100583605 |
| Gm00396cDNA18kA |
27.6983 |
10.974 |
16.724 |
29.7856 |
8.308 |
21.478 |
1.075358415 |
0.104817588 |
| Gm00492cDNA18kA |
20.5947 |
10.797 |
9.798 |
17.9274 |
7.982 |
9.946 |
0.870486096 |
-0.200106841 |
| Gm00588cDNA18kA |
33.8326 |
10.974 |
22.859 |
45.6694 |
8.22 |
37.45 |
1.349863741 |
0.432813785 |
| Gm00684cDNA18kA |
58.6971 |
11.022 |
47.675 |
106.0674 |
8.485 |
97.583 |
1.807029649 |
0.853620177 |
| Gm00792cDNA18kA |
22.4326 |
10.838 |
11.595 |
26.3795 |
8.402 |
17.978 |
1.17594483 |
0.233820377 |
| Gm00888cDNA18kA |
15.8868 |
10.573 |
5.314 |
14.8991 |
8.227 |
6.672 |
0.937828889 |
-0.092603374 |
| Gm00984cDNA18kA |
21.1363 |
10.5 |
10.637 |
15.0512 |
8.444 |
6.607 |
0.712101929 |
-0.489844334 |
| Gm01080cDNA18kA |
92.5029 |
11.193 |
81.31 |
103.3752 |
8.559 |
94.816 |
1.117534694 |
0.16031962 |
Total number of rows: 19200
Table truncated, full table size 1509 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM94964.txt.gz |
1.2 Mb |
(ftp)(http) |
TXT |
| GSM94964_Cy3.tif.gz |
77.5 Mb |
(ftp)(http) |
TIFF |
| GSM94964_Cy5.tif.gz |
76.3 Mb |
(ftp)(http) |
TIFF |
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