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| Status |
Public on Jan 01, 2007 |
| Title |
#150805 Soybean embryo, RCAT-Angora & Harovinton, London 2003 time course |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
Hvtn 70 dap L03
|
| Organism |
Glycine max |
| Characteristics |
Harovinton, soybean cultivar with low seed isoflavonoid content
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
RCAT 70 dap L03
|
| Organism |
Glycine max |
| Characteristics |
RCAT-Angora, soybean cultivar with high seed isoflavonoid content
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
|
| |
| Description |
Embryo comparison between cultivars of low (Harovinton) and high (RCAT-Angora) seed isoflavonoid content
|
| Data processing |
Arrayvision LRGC scanner layout, background subtracted intensity"
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| |
|
| Submission date |
Feb 02, 2006 |
| Last update date |
May 10, 2006 |
| Contact name |
Sangeeta Dhaubhadel |
| E-mail(s) |
[email protected]
|
| Phone |
519-457-1470 x670
|
| Fax |
519-457-3997
|
| Organization name |
SCPFRC London
|
| Department |
Agriculture & Agrifood Canada
|
| Lab |
Plant Molecular Biology
|
| Street address |
1391 Sandford St
|
| City |
London |
| State/province |
ON |
| ZIP/Postal code |
N5V 4T3 |
| Country |
Canada |
| |
|
| Platform ID |
GPL3015 |
| Series (1) |
| GSE4194 |
Soybean cultivars RCAT-Angora & Harovinton, embryo comparison and development |
|
| Data table header descriptions |
| ID_REF |
rearranged for LRGC scanner |
| CH1-VOL |
Cy3 intensity |
| CH1-Bkgd |
Cy3 background |
| CH1-sVOL |
Cy3 background subtracted intensity |
| CH2-VOL |
Cy5 intensity |
| CH2-Bkgd |
Cy5 background |
| CH2-sVOL |
Cy5 background subtracted intensity |
| RATIO |
CH2-VOL divided by CH1-VOL |
| VALUE |
log2 ratio |
| Data table |
| ID_REF |
CH1-VOL |
CH1-Bkgd |
CH1-sVOL |
CH2-VOL |
CH2-Bkgd |
CH2-sVOL |
RATIO |
VALUE |
| Gm00024cDNA18kA |
77.6676 |
0.151 |
77.517 |
49.748 |
0.122 |
49.626 |
0.640524492 |
-0.642674359 |
| Gm00120cDNA18kA |
9.5265 |
0.118 |
9.409 |
0.3031 |
0.073 |
0.23 |
0.031816512 |
-4.974080514 |
| Gm00216cDNA18kA |
4.5033 |
0.136 |
4.367 |
0.0955 |
0.092 |
0.003 |
0.021206671 |
-5.559338047 |
| Gm00312cDNA18kA |
41.5062 |
0.232 |
41.274 |
18.6246 |
0.092 |
18.532 |
0.448718505 |
-1.156117414 |
| Gm00012cDNA18kA |
80.1965 |
0.273 |
79.924 |
37.7968 |
0.01 |
37.787 |
0.471302364 |
-1.085275178 |
| Gm00108cDNA18kA |
11.5731 |
0.285 |
11.288 |
0.8816 |
0.01 |
0.871 |
0.076176651 |
-3.714507326 |
| Gm00204cDNA18kA |
30.2997 |
0.281 |
30.018 |
5.9581 |
0.01 |
5.948 |
0.196638911 |
-2.346379267 |
| Gm00300cDNA18kA |
42.6593 |
0.258 |
42.401 |
14.4008 |
0.017 |
14.384 |
0.337577035 |
-1.566711333 |
| Gm00408cDNA18kA |
52.6889 |
0.294 |
52.395 |
22.0215 |
0.082 |
21.94 |
0.417953307 |
-1.258586319 |
| Gm00504cDNA18kA |
16.1667 |
0.34 |
15.827 |
4.2577 |
0.131 |
4.127 |
0.263362344 |
-1.924879016 |
| Gm00600cDNA18kA |
37.1491 |
0.317 |
36.832 |
13.8639 |
0.126 |
13.738 |
0.37319612 |
-1.421994106 |
| Gm00696cDNA18kA |
9.763 |
0.198 |
9.565 |
5.5892 |
0.16 |
5.429 |
0.572487965 |
-0.804682731 |
| Gm00396cDNA18kA |
16.4474 |
0.146 |
16.301 |
6.8602 |
0.21 |
6.65 |
0.417099359 |
-1.261536999 |
| Gm00492cDNA18kA |
38.2792 |
0.124 |
38.155 |
19.7334 |
0.272 |
19.461 |
0.515512341 |
-0.95592113 |
| Gm00588cDNA18kA |
17.9519 |
0.112 |
17.84 |
11.5669 |
0.265 |
11.301 |
0.644327341 |
-0.634134279 |
| Gm00684cDNA18kA |
27.6584 |
0.142 |
27.517 |
11.0753 |
0.178 |
10.897 |
0.400431695 |
-1.320371923 |
| Gm00792cDNA18kA |
3.4955 |
0.113 |
3.382 |
0.9002 |
0.147 |
0.753 |
0.257531111 |
-1.957181365 |
| Gm00888cDNA18kA |
7.6269 |
0.14 |
7.487 |
0.1096 |
0.081 |
0.029 |
0.01437019 |
-6.120777081 |
| Gm00984cDNA18kA |
6.756 |
0.273 |
6.483 |
0.2539 |
0.021 |
0.233 |
0.037581409 |
-4.733837028 |
| Gm01080cDNA18kA |
114.5424 |
0.276 |
114.266 |
59.0308 |
0.021 |
59.01 |
0.515361997 |
-0.956341939 |
Total number of rows: 19200
Table truncated, full table size 1482 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM94956.txt.gz |
1.2 Mb |
(ftp)(http) |
TXT |
| GSM94956_Cy3.tif.gz |
25.0 Mb |
(ftp)(http) |
TIFF |
| GSM94956_Cy5.tif.gz |
5.2 Mb |
(ftp)(http) |
TIFF |
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