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| Status |
Public on Jan 01, 2007 |
| Title |
#150557 Soybean embryo, RCAT-Angora & Harovinton, London 2004 time course |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
RCAT 40dap L04
|
| Organism |
Glycine max |
| Characteristics |
RCAT-Angora, soybean cultivar with high seed isoflavonoid content
|
| Extracted molecule |
total RNA |
| Label |
Cy3
|
| |
|
| Channel 2 |
| Source name |
Hvtn 40dap L04
|
| Organism |
Glycine max |
| Characteristics |
Harovinton, soybean cultivar with low seed isoflavonoid content
|
| Extracted molecule |
total RNA |
| Label |
Cy5
|
| |
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| |
| Description |
Embryo comparison between cultivars of low (Harovinton) and high (RCAT-Angora) seed isoflavonoid content
|
| Data processing |
Arrayvision LRGC scanner layout, background subtracted intensity
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| |
|
| Submission date |
Feb 02, 2006 |
| Last update date |
May 10, 2006 |
| Contact name |
Sangeeta Dhaubhadel |
| E-mail(s) |
[email protected]
|
| Phone |
519-457-1470 x670
|
| Fax |
519-457-3997
|
| Organization name |
SCPFRC London
|
| Department |
Agriculture & Agrifood Canada
|
| Lab |
Plant Molecular Biology
|
| Street address |
1391 Sandford St
|
| City |
London |
| State/province |
ON |
| ZIP/Postal code |
N5V 4T3 |
| Country |
Canada |
| |
|
| Platform ID |
GPL3015 |
| Series (1) |
| GSE4194 |
Soybean cultivars RCAT-Angora & Harovinton, embryo comparison and development |
|
| Data table header descriptions |
| ID_REF |
rearranged for LRGC scanner |
| CH1-VOL |
Cy3 intensity |
| CH1-Bkgd |
Cy3 background |
| CH1-sVOL |
Cy3 background subtracted intensity |
| CH2-VOL |
Cy5 intensity |
| CH2-Bkgd |
Cy5 background |
| CH2-sVOL |
Cy5 background subtracted intensity |
| RATIO |
CH2-VOL divided by CH1-VOL |
| VALUE |
log2 ratio |
| Data table |
| ID_REF |
CH1-VOL |
CH1-Bkgd |
CH1-sVOL |
CH2-VOL |
CH2-Bkgd |
CH2-sVOL |
RATIO |
VALUE |
| Gm00024cDNA18kA |
208.205 |
15.385 |
192.82 |
138.7666 |
10.413 |
128.353 |
0.666490238 |
-0.58534435 |
| Gm00120cDNA18kA |
141.4532 |
15.352 |
126.102 |
99.7344 |
10.551 |
89.183 |
0.705069945 |
-0.50416171 |
| Gm00216cDNA18kA |
34.2495 |
16.167 |
18.083 |
20.2072 |
10.859 |
9.348 |
0.589999854 |
-0.761213497 |
| Gm00312cDNA18kA |
128.8165 |
21.588 |
107.229 |
65.329 |
11.698 |
53.631 |
0.507147764 |
-0.979521937 |
| Gm00012cDNA18kA |
118.4896 |
25.258 |
93.231 |
71.8544 |
12.466 |
59.388 |
0.606419466 |
-0.721612029 |
| Gm00108cDNA18kA |
62.34 |
21.496 |
40.844 |
34.9535 |
11.965 |
22.988 |
0.56069137 |
-0.834721231 |
| Gm00204cDNA18kA |
360.1017 |
17.631 |
342.471 |
210.9213 |
11.521 |
199.4 |
0.585727032 |
-0.771699617 |
| Gm00300cDNA18kA |
107.3705 |
17.026 |
90.344 |
79.3521 |
11.655 |
67.697 |
0.739049366 |
-0.436257359 |
| Gm00408cDNA18kA |
76.783 |
18.183 |
58.6 |
46.5614 |
11.767 |
34.795 |
0.606402459 |
-0.721652491 |
| Gm00504cDNA18kA |
51.3516 |
17.705 |
33.647 |
31.8506 |
11.335 |
20.516 |
0.620245523 |
-0.689088678 |
| Gm00600cDNA18kA |
126.3158 |
16.977 |
109.339 |
87.6259 |
11.391 |
76.235 |
0.693704984 |
-0.527605845 |
| Gm00696cDNA18kA |
43.8432 |
16.868 |
26.975 |
29.8565 |
11.658 |
18.199 |
0.680983596 |
-0.554308049 |
| Gm00396cDNA18kA |
77.8268 |
15.597 |
62.23 |
55.1179 |
11.397 |
43.721 |
0.708212338 |
-0.497746117 |
| Gm00492cDNA18kA |
66.1199 |
14.583 |
51.537 |
39.3083 |
11.251 |
28.057 |
0.594500294 |
-0.750250571 |
| Gm00588cDNA18kA |
77.6106 |
14.749 |
62.862 |
54.745 |
11.021 |
43.724 |
0.705380451 |
-0.503526502 |
| Gm00684cDNA18kA |
104.7114 |
15.672 |
89.04 |
74.9699 |
10.968 |
64.002 |
0.715966934 |
-0.482035135 |
| Gm00792cDNA18kA |
73.692 |
15.107 |
58.585 |
41.5757 |
11.034 |
30.542 |
0.564182001 |
-0.825767455 |
| Gm00888cDNA18kA |
27.1573 |
14.815 |
12.343 |
19.4547 |
11.239 |
8.215 |
0.716370921 |
-0.481221319 |
| Gm00984cDNA18kA |
27.9403 |
15.546 |
12.394 |
15.2724 |
11.525 |
3.747 |
0.546608304 |
-0.871420717 |
| Gm01080cDNA18kA |
64.1436 |
14.708 |
49.436 |
41.3915 |
11.771 |
29.62 |
0.645294308 |
-0.631970794 |
Total number of rows: 19200
Table truncated, full table size 1546 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM94937.txt.gz |
1.1 Mb |
(ftp)(http) |
TXT |
| GSM94937_Cy3.tif.gz |
79.5 Mb |
(ftp)(http) |
TIFF |
| GSM94937_Cy5.tif.gz |
77.2 Mb |
(ftp)(http) |
TIFF |
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