NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM85651 Query DataSets for GSM85651
Status Public on Dec 01, 2005
Title 100 uM salicylic acid treated, 3 h, replicate 1
Sample type RNA
 
Source name suspension cell culture, 100 uM salicylic acid 3 h
Organism Arabidopsis thaliana
Characteristics Arabidopsis suspension cell culture, cv Lansberg erecta, 4 days post sub-culturing, sample collected 3 h post-treatment with treatment starting 2 h into the light cycle of a 16 h light 8 h dark light cycle
Biomaterial provider Plant Molecular Biology Group: Rachel Clifton, Ryan Lister, Pia Sappl
Treatment protocol 250 mL flasks of suspension cells were treated by the addition of 120 ul of 100 mM salicylic acid to obtain a final concentration of 100 uM in the flask, samples were collected 3 h after treatment.
Extracted molecule total RNA
Label biotin
Label protocol Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type Arabidopsis suspension cell culture, pale green in colour
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Dec 01, 2005
Last update date Dec 01, 2005
Contact name Rachel Clifton
E-mail(s) [email protected]
Organization name Plant Energy Biology, ARC Centre of Excellence
Department Biochemistry, UWA
Lab Plant Molecular Biology Group
Street address 4th Floor CMS Building M310, University of Western Australia
City Crawley
State/province Western Australia
ZIP/Postal code 6009
Country Australia
 
Platform ID GPL198
Series (1)
GSE3709 Cell culture treatment study

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 241.3 P 0.000258
AFFX-BioB-M_at 345.6 P 0.000052
AFFX-BioB-3_at 255.1 P 0.000095
AFFX-BioC-5_at 669.6 P 0.000044
AFFX-BioC-3_at 431.6 P 0.000081
AFFX-BioDn-5_at 691.5 P 0.000044
AFFX-BioDn-3_at 2666.6 P 0.000044
AFFX-CreX-5_at 5270.3 P 0.000044
AFFX-CreX-3_at 8808.7 P 0.000044
AFFX-DapX-5_at 390.6 P 0.00006
AFFX-DapX-M_at 647.9 P 0.000052
AFFX-DapX-3_at 984.3 P 0.000052
AFFX-LysX-5_at 51.9 P 0.001248
AFFX-LysX-M_at 79.9 P 0.018281
AFFX-LysX-3_at 98.5 P 0.000297
AFFX-PheX-5_at 109.8 P 0.001796
AFFX-PheX-M_at 86.6 P 0.002867
AFFX-PheX-3_at 162.2 P 0.000446
AFFX-ThrX-5_at 103.2 P 0.000195
AFFX-ThrX-M_at 135.4 P 0.000258

Total number of rows: 22810

Table truncated, full table size 586 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap