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Sample GSM85647 Query DataSets for GSM85647
Status Public on Dec 01, 2005
Title rotenone treated, 3 h, replicate 1
Sample type RNA
 
Source name suspension cell culture, rotenone 3 h
Organism Arabidopsis thaliana
Characteristics Arabidopsis suspension cell culture, cv Lansberg erecta, 4 days post sub-culturing, sample collected 3 h post-treatment with treatment starting 2 h into the light cycle of a 16 h light 8 h dark light cycle
Biomaterial provider Plant Molecular Biology Group: Rachel Clifton, Ryan Lister, Pia Sappl
Treatment protocol 250 mL flasks of suspension cells were treated by the addition of 480 ul of 10 mM rotenone to obtain a final concentration of 40 uM in the flask, samples were collected 3 h after treatment.
Extracted molecule total RNA
Label biotin
Label protocol Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type Arabidopsis suspension cell culture, pale green in colour
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Dec 01, 2005
Last update date Dec 01, 2005
Contact name Rachel Clifton
E-mail(s) [email protected]
Organization name Plant Energy Biology, ARC Centre of Excellence
Department Biochemistry, UWA
Lab Plant Molecular Biology Group
Street address 4th Floor CMS Building M310, University of Western Australia
City Crawley
State/province Western Australia
ZIP/Postal code 6009
Country Australia
 
Platform ID GPL198
Series (1)
GSE3709 Cell culture treatment study

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 308.9 P 0.00034
AFFX-BioB-M_at 407.8 P 0.000052
AFFX-BioB-3_at 308.2 P 0.000169
AFFX-BioC-5_at 707.6 P 0.00006
AFFX-BioC-3_at 528.5 P 0.000044
AFFX-BioDn-5_at 716.7 P 0.000052
AFFX-BioDn-3_at 3225 P 0.000044
AFFX-CreX-5_at 5835.9 P 0.000044
AFFX-CreX-3_at 9067.1 P 0.000044
AFFX-DapX-5_at 356.7 P 0.00007
AFFX-DapX-M_at 693.5 P 0.00007
AFFX-DapX-3_at 1106.5 P 0.000044
AFFX-LysX-5_at 57.6 P 0.00844
AFFX-LysX-M_at 65.8 P 0.021902
AFFX-LysX-3_at 122.4 P 0.000081
AFFX-PheX-5_at 49.3 P 0.033677
AFFX-PheX-M_at 71.7 P 0.013811
AFFX-PheX-3_at 157.9 P 0.000127
AFFX-ThrX-5_at 84.1 P 0.003595
AFFX-ThrX-M_at 127.8 P 0.00011

Total number of rows: 22810

Table truncated, full table size 586 Kbytes.




Supplementary data files not provided

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