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Sample GSM85629 Query DataSets for GSM85629
Status Public on Dec 01, 2005
Title 0.125 uM oligomycin treated, 3 h, replicate 1
Sample type RNA
 
Source name suspension cell culture, 0.125 uM oligomycin, 3 h
Organism Arabidopsis thaliana
Characteristics Arabidopsis suspension cell culture, cv Lansberg erecta, 4 days post sub-culturing, sample collected 3 h post-treatment with treatment starting 2 h into the light cycle of a 16 h light 8 h dark light cycle
Biomaterial provider Plant Molecular Biology Group: Rachel Clifton, Ryan Lister, Pia Sappl
Treatment protocol 250 mL flasks of suspension cells were treated by the addition of 15 uL of 1 mM oligomycin dissolved in ethanol to obtain a final concentration in the flask of 0.125 uM, samples were collected 3 h after treatment.
Extracted molecule total RNA
Label biotin
Label protocol Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type Arabidopsis suspension cell culture, pale green in colour
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Dec 01, 2005
Last update date Dec 01, 2005
Contact name Rachel Clifton
E-mail(s) [email protected]
Organization name Plant Energy Biology, ARC Centre of Excellence
Department Biochemistry, UWA
Lab Plant Molecular Biology Group
Street address 4th Floor CMS Building M310, University of Western Australia
City Crawley
State/province Western Australia
ZIP/Postal code 6009
Country Australia
 
Platform ID GPL198
Series (1)
GSE3709 Cell culture treatment study

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 334.3 P 0.000509
AFFX-BioB-M_at 325.4 P 0.000044
AFFX-BioB-3_at 316.6 P 0.000195
AFFX-BioC-5_at 689.4 P 0.00007
AFFX-BioC-3_at 442.6 P 0.000169
AFFX-BioDn-5_at 784.3 P 0.000044
AFFX-BioDn-3_at 3497.8 P 0.000044
AFFX-CreX-5_at 6392.8 P 0.000044
AFFX-CreX-3_at 10293 P 0.000052
AFFX-DapX-5_at 526 P 0.000044
AFFX-DapX-M_at 911.2 P 0.000052
AFFX-DapX-3_at 1417.3 P 0.000052
AFFX-LysX-5_at 61.4 P 0.003595
AFFX-LysX-M_at 87.3 P 0.003212
AFFX-LysX-3_at 118.1 P 0.000857
AFFX-PheX-5_at 157.4 P 0.000581
AFFX-PheX-M_at 142.8 P 0.001796
AFFX-PheX-3_at 150.5 P 0.00007
AFFX-ThrX-5_at 152.6 P 0.000446
AFFX-ThrX-M_at 231.8 P 0.000081

Total number of rows: 22810

Table truncated, full table size 585 Kbytes.




Supplementary data files not provided

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