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Sample GSM85627 Query DataSets for GSM85627
Status Public on Dec 01, 2005
Title hydrogen peroxide treated, 3 h, replicate 2
Sample type RNA
 
Source name suspension cell culture, 10 mM hydrogen peroxide, 3 h
Organism Arabidopsis thaliana
Characteristics Arabidopsis suspension cell culture, cv Lansberg erecta, 4 days post sub-culturing, sample collected 3 h post-treatment with treatment starting 2 h into the light cycle of a 16 h light 8 h dark light cycle
Biomaterial provider Plant Molecular Biology Group: Rachel Clifton, Ryan Lister, Pia Sappl
Treatment protocol 250 mL flasks of suspension cells were treated by the addition of 130 uL 8.82 M hydrogen peroxide to a final concentration of 10 mM samples were collected 3 h after treatment.
Extracted molecule total RNA
Label biotin
Label protocol Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Wild type Arabidopsis suspension cell culture, pale green in colour
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Dec 01, 2005
Last update date Dec 01, 2005
Contact name Rachel Clifton
E-mail(s) [email protected]
Organization name Plant Energy Biology, ARC Centre of Excellence
Department Biochemistry, UWA
Lab Plant Molecular Biology Group
Street address 4th Floor CMS Building M310, University of Western Australia
City Crawley
State/province Western Australia
ZIP/Postal code 6009
Country Australia
 
Platform ID GPL198
Series (1)
GSE3709 Cell culture treatment study

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 260.8 P 0.00034
AFFX-BioB-M_at 264.6 P 0.00007
AFFX-BioB-3_at 285.6 P 0.000147
AFFX-BioC-5_at 623.2 P 0.000052
AFFX-BioC-3_at 425.8 P 0.00006
AFFX-BioDn-5_at 638.6 P 0.000052
AFFX-BioDn-3_at 3062.4 P 0.000044
AFFX-CreX-5_at 5019.4 P 0.000044
AFFX-CreX-3_at 9029.4 P 0.000052
AFFX-DapX-5_at 446.5 P 0.000052
AFFX-DapX-M_at 807.2 P 0.000044
AFFX-DapX-3_at 1116.9 P 0.000052
AFFX-LysX-5_at 75.6 P 0.000971
AFFX-LysX-M_at 102.9 P 0.001593
AFFX-LysX-3_at 139.7 P 0.00006
AFFX-PheX-5_at 103.2 P 0.000581
AFFX-PheX-M_at 116.6 P 0.00141
AFFX-PheX-3_at 188.7 P 0.000081
AFFX-ThrX-5_at 151.6 P 0.000081
AFFX-ThrX-M_at 173.4 P 0.000095

Total number of rows: 22810

Table truncated, full table size 585 Kbytes.




Supplementary data files not provided

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