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| Status |
Public on Oct 08, 2024 |
| Title |
spinal cord, scar resection + scaffold2 |
| Sample type |
SRA |
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| Source name |
spinal cord
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| Organism |
Rattus norvegicus |
| Characteristics |
tissue: spinal cord
treatment: Scar resection + scaffold
time: 7weeks after SCI
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| Extracted molecule |
total RNA |
| Extraction protocol |
The total RNA was extracted using the RNeasy Mini Kit (Qiagen)
The RNA from each sample was purified, and the mRNA libraries were prepared following the TruSeq Stranded mRNA LT Sample Prep Kit (Illumina, San Diego, CA, United States) protocol
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
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| Description |
331_S6_R1_001
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| Data processing |
Raw reads were trimmed for quality and read length using Trimmomatic 0.38.
Transcript counts were obtained using StringTie version 2.1.3b.
Assembly: rn6
Supplementary files format and content: raw counts for each sample
Supplementary files format and content: TPM values for each sample
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| Submission date |
Oct 01, 2024 |
| Last update date |
Oct 08, 2024 |
| Contact name |
Keitaro Ito |
| E-mail(s) |
[email protected]
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| Organization name |
Keio university
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| Street address |
iwatocho5-1-903
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| City |
Shinjuku-ku |
| State/province |
Tokyo |
| ZIP/Postal code |
162-0832 |
| Country |
Japan |
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| Platform ID |
GPL18694 |
| Series (1) |
| GSE278491 |
The effects of scar resection in chronic complete spinal cord injury(SCI) and the effects of scar resection combined with decellularized hydrogel (scaffold) |
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| Relations |
| BioSample |
SAMN44006704 |
| SRA |
SRX26248612 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
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