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Series GSE278491 Query DataSets for GSE278491
Status Public on Oct 08, 2024
Title The effects of scar resection in chronic complete spinal cord injury(SCI) and the effects of scar resection combined with decellularized hydrogel (scaffold)
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary This study examines the molecular effects of surgical scar resection in complete chronic spinal cord injury (SCI) through RNA sequencing. Results show that scar resection alters gene expression, with downregulation of axonal growth inhibitors and upregulation of neuroprotective genes. Additionally, the application of a decellularized extracellular matrix (dECM) hydrogel as a scaffold promoted angiogenesis. Gene Ontology analysis indicated enrichment of immune-related processes, suggesting that scar resection improves the spinal cord microenvironment for neural repair. These findings indicate the potential of combining scar resection with scaffolding to support recovery after chronic complete SCI.
 
Overall design To confirm the treatment effects, we created a rat model of complete transection at the thoracic level 10 of the spinal cord and performed therapeutic intervention six weeks post-injury during the chronic phase.
We created a group that underwent scar resection on the chronically injured spinal cord and another group where a scaffold was implanted after scar resection. The untreated group was used as the control.
 
Contributor(s) Ito K
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Submission date Oct 01, 2024
Last update date Oct 08, 2024
Contact name Keitaro Ito
E-mail(s) [email protected]
Organization name Keio university
Street address iwatocho5-1-903
City Shinjuku-ku
State/province Tokyo
ZIP/Postal code 162-0832
Country Japan
 
Platforms (1)
GPL18694 Illumina HiSeq 2500 (Rattus norvegicus)
Samples (11)
GSM8547645 spinal cord, scar resection1
GSM8547646 spinal cord, scar resection2
GSM8547647 spinal cord, scar resection3
Relations
BioProject PRJNA1167626

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Supplementary file Size Download File type/resource
GSE278491_processed_DEG_control_vs_scar_resection_+_scaffold.xlsx 2.2 Mb (ftp)(http) XLSX
GSE278491_processed_DEG_control_vs_scar_resection_.xlsx 2.2 Mb (ftp)(http) XLSX
GSE278491_processed_DEG_scar_resection_vs_scar_resection_+_scaffold.xlsx 2.1 Mb (ftp)(http) XLSX
GSE278491_processed_TPM_control_vs_scar_resection_+_scaffold_.xlsx 1.6 Mb (ftp)(http) XLSX
GSE278491_processed_TPM_control_vs_scar_resection_.xlsx 1.6 Mb (ftp)(http) XLSX
GSE278491_processed_TPM_scar_resection_vs_scar_resection_+_scaffold.xlsx 1.8 Mb (ftp)(http) XLSX
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Raw data are available in SRA

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