|
| Status |
Public on Oct 31, 2024 |
| Title |
COL_04 |
| Sample type |
SRA |
| |
|
| Source name |
Colon
|
| Organism |
Mus musculus |
| Characteristics |
tissue: Colon
genotype: C57BL/6J.WT
treatment: n/a
|
| Extracted molecule |
total RNA |
| Extraction protocol |
on column total RNA isolation using kit
TruSeq Illumina Paired Ends
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
Colon C57BL/6J.WT
|
| Data processing |
Reads were aligned to the GRCm38 reference genome using GSNAP (version 2013-11-01)
Aligned reads within exons defined by GENCODE (v27) were counted using the countFeatures method from HTSeqGenie (v 4.2.1)
|
| |
|
| Submission date |
Sep 26, 2023 |
| Last update date |
Oct 31, 2024 |
| Contact name |
Jason A Hackney |
| E-mail(s) |
[email protected]
|
| Organization name |
Genentech, Inc.
|
| Department |
Department of Bioinformatics and Computational Biology
|
| Street address |
1 DNA Way
|
| City |
South San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94080 |
| Country |
USA |
| |
|
| Platform ID |
GPL13112 |
| Series (2) |
| GSE243918 |
Argonaute3-SF3B3 complex controls pre-mRNA splicing to restrain Type-2 immunity |
| GSE244066 |
Argonaute3-SF3B3 complex controls pre-mRNA splicing to restrain Type-2 immunity [RNA-seq: dissected tissues] |
|
| Relations |
| BioSample |
SAMN37553725 |
| SRA |
SRX21898801 |
