|
| Status |
Public on Aug 25, 2023 |
| Title |
mRNA-RevIH2i2_3 |
| Sample type |
SRA |
| |
|
| Source name |
ovaries
|
| Organism |
Drosophila melanogaster |
| Characteristics |
tissue: ovaries
age: 3-6 day-old
genotype: RevIH2i2
treatment: Flies were kept at standard conditon at 25°C
|
| Growth protocol |
Flies were kept at standard conditon at 25°C
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA extraction with TRIzol
DNBSEQ
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
DNBSEQ-G400 |
| |
|
| Description |
3-6 day old female
|
| Data processing |
trim/remove adapters
remove low quality reads
remove N reads
remove polyX
Assembly: dm6
Supplementary files format and content: bam files from mapping of the respective paired-end reads on ZAM_I and ZAM_LTR (Repbase) using HISAT2 (Galaxy Version 2.1.0+galaxy5)
Supplementary files format and content: BigWig files from mapping of the respective paired-end reads on the Drosophila melanogaster dm6 genome using HISAT2 (Galaxy Version 2.1.0+galaxy5)
|
| |
|
| Submission date |
Jun 27, 2023 |
| Last update date |
Aug 25, 2023 |
| Contact name |
Emilie BRASSET |
| E-mail(s) |
[email protected]
|
| Organization name |
CNRS 6293 INSERM U1103 Université Clermont Auvergne
|
| Lab |
iGReD
|
| Street address |
28 place Henri dunant
|
| City |
CLERMONT-FERRAND |
| ZIP/Postal code |
63000 |
| Country |
France |
| |
|
| Platform ID |
GPL32218 |
| Series (1) |
| GSE235966 |
Germline piRNAs counteract endogenous retrovirus invasion from somatic cells |
|
| Relations |
| BioSample |
SAMN36000572 |
| SRA |
SRX20792962 |
