|
| Status |
Public on Aug 12, 2023 |
| Title |
One-day old |
| Sample type |
SRA |
| |
|
| Source name |
Adult midgut
|
| Organism |
Drosophila melanogaster |
| Characteristics |
tissue: Adult midgut
cell type: Midgut epithelial cells
genotype: Canton S (wild type)
Sex: Female
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Single-cell RNA-Seq libraries were prepared using Chromium Single Cell v3.1 Reagent Kit (10X Genomics) according to manufacturer’s protocol
Library was performed according to the manufacter’s instructions (single cell v3.1 protocol, 10x Genomics).
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic single cell |
| Library selection |
cDNA |
| Instrument model |
DNBSEQ-G400 |
| |
|
| Data processing |
The demultiplexing, barcoded processing, gene counting and aggregation were made using the Cell Ranger software v6.0.1 (https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/what-is-cell-ranger)
Assembly: BDGP6.32
Supplementary files format and content: Tab-separated values files and matrix files
|
| |
|
| Submission date |
Jul 07, 2022 |
| Last update date |
Aug 12, 2023 |
| Contact name |
Luis Augusto Eijy Nagai |
| E-mail(s) |
[email protected]
|
| Organization name |
The University of Tokyo
|
| Department |
Institute for Quantitative Biosciences
|
| Lab |
Laboratory of Computational Genomics
|
| Street address |
#201 Main building, Institute for Quantitative Biosciences, 1-1-1 Yayoi
|
| City |
Bunkyo-ku |
| State/province |
Tokyo |
| ZIP/Postal code |
113-0032 |
| Country |
Japan |
| |
|
| Platform ID |
GPL32218 |
| Series (1) |
| GSE207662 |
Nutrient-driven dedifferentiation of enteroendocrine cells promotes adaptive intestinal growth |
|
| Relations |
| BioSample |
SAMN29579155 |
| SRA |
SRX16060547 |
