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Sample GSM5717643 Query DataSets for GSM5717643
Status Public on Aug 01, 2022
Title PARN mutant patient1 iPSCs_Untreated
Sample type SRA
 
Source name PARN mutant patient1 iPSCs
Organism Homo sapiens
Characteristics cell type: Fibroblast derived iPSCs
treatment: Untreated
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using TRIzol (Ambion) according to manufacturer’s protocol.
RNA-Seq library prepared using Illumina TruSeq stranded total RNA with RiboZero Gold or RiboZero Plus, per the manufacturer instruction
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 2500
 
Description 4489_mix-O68C4-CTRL_S3_L002
Data processing basecalling and demultiplex with Illumina bcl2fastq
Reads mapping to genome using HISAT2
Produces normalized read count FPKM and differential expression analysis using Cuffdiff (of the Cufflink package v2.1.1)
Normalized read count is then further analyzed and visualized with Qlucore Omics Explorer (v3.7)
Genome_build: hg38
 
Submission date Dec 04, 2021
Last update date Aug 01, 2022
Contact name Suneet Agarwal
Organization name Boston Children's Hospital
Department Hematology/Oncology
Street address Karp 07214, 1 Blackfan Circle
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL16791
Series (1)
GSE190173 Domain-specific mutations in dyskerin disrupt 3´end processing of snoRNAs
Relations
BioSample SAMN23637029
SRA SRX13314008

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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