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Sample GSM550400 Query DataSets for GSM550400
Status Public on Aug 11, 2010
Title WB-H-4637
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 18
gender: Female
ethnicity: Afican American
healthy control: pSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 03, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -5.078246 0.7285903
ILMN_2055271 15.36616 0.03689064
ILMN_1736007 3.703978 0.3043478
ILMN_2383229 -4.649532 0.7022398
ILMN_1806310 2.602291 0.3544137
ILMN_1779670 -2.749695 0.6139657
ILMN_2321282 -16.8818 0.9920949
ILMN_1671474 4.196103 0.2740448
ILMN_1772582 4.609783 0.2582345
ILMN_1735698 9.687062 0.113307
ILMN_1653355 28.06313 0.005270092
ILMN_1717783 0.1965025 0.4650856
ILMN_1705025 6.742847 0.1844532
ILMN_1814316 -9.7782 0.8853755
ILMN_2359168 -5.373539 0.743083
ILMN_1731507 0.3139296 0.4611331
ILMN_1787689 3.738955 0.3043478
ILMN_1745607 3.312279 0.3175231
ILMN_2136495 0.4849373 0.4519104
ILMN_1668111 5.877375 0.2081686

Total number of rows: 48803

Table truncated, full table size 1462 Kbytes.




Supplementary file Size Download File type/resource
GSM550400_4856076044_L_Raw.txt.gz 525.5 Kb (ftp)(http) TXT
Processed data included within Sample table

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