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Sample GSM550397 Query DataSets for GSM550397
Status Public on Aug 11, 2010
Title WB-H-7254
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 17
gender: Female
ethnicity: Hispanic
healthy control: pSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 03, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -10.02416 0.9446641
ILMN_2055271 20.88686 0.006587615
ILMN_1736007 -3.930386 0.7114624
ILMN_2383229 -11.14242 0.9617918
ILMN_1806310 -1.602001 0.5520422
ILMN_1779670 1.850964 0.3438735
ILMN_2321282 4.752094 0.2094862
ILMN_1671474 16.74527 0.01976285
ILMN_1772582 -2.657948 0.6205534
ILMN_1735698 8.016687 0.1054018
ILMN_1653355 13.36506 0.03293808
ILMN_1717783 -6.376019 0.8339921
ILMN_1705025 11.34469 0.05665349
ILMN_1814316 -7.645056 0.8761528
ILMN_2359168 11.00026 0.05665349
ILMN_1731507 -6.127518 0.8221344
ILMN_1787689 -6.873949 0.8484849
ILMN_1745607 3.521858 0.2608696
ILMN_2136495 5.660903 0.1765481
ILMN_1668111 -2.168192 0.6021081

Total number of rows: 48803

Table truncated, full table size 1495 Kbytes.




Supplementary file Size Download File type/resource
GSM550397_4856076024_A_Raw.txt.gz 527.9 Kb (ftp)(http) TXT
Processed data included within Sample table

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