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Sample GSM550396 Query DataSets for GSM550396
Status Public on Aug 11, 2010
Title WB-H-2811-2
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 10
gender: Female
ethnicity: Hispanic
healthy control: pSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 03, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 3.460446 0.2516469
ILMN_2055271 13.06981 0.03557312
ILMN_1736007 0.9301221 0.397892
ILMN_2383229 -2.929137 0.6495389
ILMN_1806310 2.641208 0.3030303
ILMN_1779670 2.626907 0.3030303
ILMN_2321282 4.665565 0.1963109
ILMN_1671474 3.584751 0.2450593
ILMN_1772582 1.893839 0.3465086
ILMN_1735698 -0.9931735 0.5256917
ILMN_1653355 28.6968 0.003952569
ILMN_1717783 -1.33162 0.544137
ILMN_1705025 12.43583 0.03689064
ILMN_1814316 4.842664 0.1897233
ILMN_2359168 6.466856 0.1330698
ILMN_1731507 0.949006 0.3965744
ILMN_1787689 7.53663 0.1040843
ILMN_1745607 4.657144 0.1976285
ILMN_2136495 4.446224 0.2068511
ILMN_1668111 0.4168903 0.4334651

Total number of rows: 48803

Table truncated, full table size 1484 Kbytes.




Supplementary file Size Download File type/resource
GSM550396_4856050053_F_Raw.txt.gz 526.5 Kb (ftp)(http) TXT
Processed data included within Sample table

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