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Sample GSM550395 Query DataSets for GSM550395
Status Public on Aug 11, 2010
Title WB-H-1358-2
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 10
gender: Female
ethnicity: Afican American
healthy control: pSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 03, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 3.387055 0.198946
ILMN_2055271 4.031603 0.1660079
ILMN_1736007 1.191611 0.3254282
ILMN_2383229 0.6641794 0.3754941
ILMN_1806310 2.793014 0.2305665
ILMN_1779670 7.897768 0.06324111
ILMN_2321282 7.490898 0.0685112
ILMN_1671474 6.171917 0.085639
ILMN_1772582 1.086643 0.3372859
ILMN_1735698 1.798612 0.2911726
ILMN_1653355 18.24727 0.009222661
ILMN_1717783 1.882429 0.2885376
ILMN_1705025 1.48728 0.3017128
ILMN_1814316 -7.079839 0.9578393
ILMN_2359168 6.838152 0.07509881
ILMN_1731507 -0.3342371 0.4690382
ILMN_1787689 -4.064579 0.7839262
ILMN_1745607 -3.286702 0.7351779
ILMN_2136495 2.255642 0.2661397
ILMN_1668111 -5.087058 0.8550724

Total number of rows: 48803

Table truncated, full table size 1477 Kbytes.




Supplementary file Size Download File type/resource
GSM550395_4856050053_E_Raw.txt.gz 526.4 Kb (ftp)(http) TXT
Processed data included within Sample table

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