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Sample GSM550386 Query DataSets for GSM550386
Status Public on Aug 11, 2010
Title WB-H-1254
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 5
gender: Male
ethnicity: Hispanic
healthy control: Strep and Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 03, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -5.166563 0.8603426
ILMN_2055271 5.390268 0.1291173
ILMN_1736007 5.063251 0.1475626
ILMN_2383229 -6.79154 0.9328063
ILMN_1806310 7.158774 0.08432148
ILMN_1779670 2.858543 0.2503294
ILMN_2321282 1.606738 0.3135705
ILMN_1671474 -1.797937 0.5915679
ILMN_1772582 -1.804361 0.5915679
ILMN_1735698 1.762395 0.3083004
ILMN_1653355 15.77551 0.0171278
ILMN_1717783 -5.845785 0.886693
ILMN_1705025 -0.02693307 0.4123847
ILMN_1814316 -5.256319 0.8616601
ILMN_2359168 1.365943 0.3267457
ILMN_1731507 0.6426349 0.3662714
ILMN_1787689 8.230421 0.06192358
ILMN_1745607 2.057438 0.2859025
ILMN_2136495 -2.654179 0.6772069
ILMN_1668111 -3.946351 0.7865613

Total number of rows: 48803

Table truncated, full table size 1475 Kbytes.




Supplementary file Size Download File type/resource
GSM550386_4676163088_D_Raw.txt.gz 526.7 Kb (ftp)(http) TXT
Processed data included within Sample table

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