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Sample GSM550382 Query DataSets for GSM550382
Status Public on Aug 11, 2010
Title WB-H-1358
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 10
gender: Female
ethnicity: Afican American
healthy control: Strep and Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 03, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -1.374224 0.5520422
ILMN_2055271 3.975766 0.2108037
ILMN_1736007 8.821087 0.08695652
ILMN_2383229 -7.787056 0.9196311
ILMN_1806310 -2.637176 0.6350461
ILMN_1779670 -1.517193 0.5599473
ILMN_2321282 1.271845 0.3557312
ILMN_1671474 5.453562 0.1462451
ILMN_1772582 7.556508 0.09881423
ILMN_1735698 4.79203 0.1765481
ILMN_1653355 12.30675 0.03820817
ILMN_1717783 -3.380413 0.6969697
ILMN_1705025 0.8131555 0.3860343
ILMN_1814316 -0.7247203 0.4993412
ILMN_2359168 -1.875655 0.5770751
ILMN_1731507 0.6187468 0.4031621
ILMN_1787689 -5.401256 0.8247694
ILMN_1745607 -3.180082 0.6864295
ILMN_2136495 3.504308 0.2332016
ILMN_1668111 -7.836426 0.9222661

Total number of rows: 48803

Table truncated, full table size 1475 Kbytes.




Supplementary file Size Download File type/resource
GSM550382_4676163048_F_Raw.txt.gz 526.9 Kb (ftp)(http) TXT
Processed data included within Sample table

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