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Sample GSM550380 Query DataSets for GSM550380
Status Public on Aug 11, 2010
Title WB-H-0853
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 12
gender: Female
ethnicity: Afican American
healthy control: Strep and Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 03, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -6.724763 0.8919631
ILMN_2055271 1.009224 0.3399209
ILMN_1736007 -0.2233187 0.4268775
ILMN_2383229 -2.131245 0.5652174
ILMN_1806310 5.128004 0.1660079
ILMN_1779670 1.793299 0.2964427
ILMN_2321282 0.9120536 0.3504611
ILMN_1671474 -4.510479 0.743083
ILMN_1772582 -0.6070904 0.4492754
ILMN_1735698 6.640046 0.1251647
ILMN_1653355 7.783772 0.09881423
ILMN_1717783 -3.187306 0.6350461
ILMN_1705025 3.247713 0.2345191
ILMN_1814316 3.866848 0.2094862
ILMN_2359168 0.35132 0.3820817
ILMN_1731507 -3.137958 0.6350461
ILMN_1787689 0.05226633 0.4123847
ILMN_1745607 -6.998515 0.9077734
ILMN_2136495 -7.979537 0.9393939
ILMN_1668111 -11.66423 0.9920949

Total number of rows: 48803

Table truncated, full table size 1475 Kbytes.




Supplementary file Size Download File type/resource
GSM550380_4676163047_L_Raw.txt.gz 529.7 Kb (ftp)(http) TXT
Processed data included within Sample table

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