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Sample GSM550369 Query DataSets for GSM550369
Status Public on Aug 11, 2010
Title WB-H-0545
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 6
gender: Female
ethnicity: Hispanic
healthy control: Strep and Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 03, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -11.2732 0.8642951
ILMN_2055271 2.376364 0.4018445
ILMN_1736007 5.891856 0.2648221
ILMN_2383229 -5.675512 0.6824769
ILMN_1806310 -6.867615 0.7220026
ILMN_1779670 12.21819 0.1185771
ILMN_2321282 13.96366 0.08695652
ILMN_1671474 9.37148 0.168643
ILMN_1772582 -7.89613 0.7654809
ILMN_1735698 17.95329 0.05270092
ILMN_1653355 12.11983 0.1198946
ILMN_1717783 3.925349 0.3241107
ILMN_1705025 5.878702 0.2674572
ILMN_1814316 -5.647236 0.6798419
ILMN_2359168 -6.146599 0.6982872
ILMN_1731507 10.73535 0.1449275
ILMN_1787689 0.7079108 0.455863
ILMN_1745607 -1.293207 0.5230566
ILMN_2136495 2.370153 0.4018445
ILMN_1668111 -2.149194 0.5507246

Total number of rows: 48803

Table truncated, full table size 1477 Kbytes.




Supplementary file Size Download File type/resource
GSM550369_4676163044_C_Raw.txt.gz 526.8 Kb (ftp)(http) TXT
Processed data included within Sample table

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