NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM550366 Query DataSets for GSM550366
Status Public on Aug 11, 2010
Title WB-H-2818
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 11
gender: Male
ethnicity: Afican American
healthy control: Strep and Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 03, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -4.320034 0.7536232
ILMN_2055271 8.176786 0.09354414
ILMN_1736007 2.577517 0.2411067
ILMN_2383229 -0.4571594 0.4598155
ILMN_1806310 -1.260689 0.5296443
ILMN_1779670 -2.211377 0.5889328
ILMN_2321282 6.967117 0.1172596
ILMN_1671474 1.948034 0.2819499
ILMN_1772582 2.466798 0.2463768
ILMN_1735698 1.470702 0.3135705
ILMN_1653355 10.99612 0.05665349
ILMN_1717783 -4.708695 0.7812912
ILMN_1705025 1.524957 0.3096179
ILMN_1814316 -6.487805 0.8801054
ILMN_2359168 3.073006 0.2147563
ILMN_1731507 -2.601053 0.6192358
ILMN_1787689 0.0854887 0.4163373
ILMN_1745607 -1.007113 0.5111989
ILMN_2136495 -5.3318 0.8208169
ILMN_1668111 -9.67991 0.9736496

Total number of rows: 48803

Table truncated, full table size 1502 Kbytes.




Supplementary file Size Download File type/resource
GSM550366_4676163001_L_Raw.txt.gz 531.5 Kb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap