NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM550365 Query DataSets for GSM550365
Status Public on Aug 11, 2010
Title WB-H-2806
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 16
gender: Male
ethnicity: Hispanic
healthy control: pSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 03, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -7.094672 0.7444005
ILMN_2055271 20.72299 0.04084321
ILMN_1736007 8.492748 0.168643
ILMN_2383229 -1.543999 0.4940712
ILMN_1806310 -12.74167 0.9209486
ILMN_1779670 -3.12909 0.5770751
ILMN_2321282 5.871708 0.2384717
ILMN_1671474 2.11701 0.3399209
ILMN_1772582 -3.415844 0.5889328
ILMN_1735698 -0.08222773 0.4361001
ILMN_1653355 20.14287 0.04611331
ILMN_1717783 -10.23932 0.8603426
ILMN_1705025 5.733015 0.2397892
ILMN_1814316 -9.408356 0.8353096
ILMN_2359168 11.43848 0.1225296
ILMN_1731507 -9.400373 0.8353096
ILMN_1787689 28.0159 0.01976285
ILMN_1745607 -6.044038 0.7035573
ILMN_2136495 -15.28947 0.9657444
ILMN_1668111 -3.659526 0.5968379

Total number of rows: 48803

Table truncated, full table size 1473 Kbytes.




Supplementary file Size Download File type/resource
GSM550365_4493594564_F_Raw.txt.gz 529.3 Kb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap