NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM550352 Query DataSets for GSM550352
Status Public on Aug 11, 2010
Title WB-H-7831
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 37
gender: Female
ethnicity: Caucasian
healthy control: ASLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 03, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 0.01126261 0.4453228
ILMN_2055271 6.007241 0.2160738
ILMN_1736007 7.093664 0.1831357
ILMN_2383229 3.036019 0.3227932
ILMN_1806310 -7.9205 0.8208169
ILMN_1779670 7.981325 0.1633729
ILMN_2321282 6.305687 0.2055336
ILMN_1671474 3.508801 0.3056653
ILMN_1772582 4.878589 0.2621871
ILMN_1735698 9.770349 0.1119895
ILMN_1653355 10.76777 0.09617918
ILMN_1717783 -0.3157582 0.4637681
ILMN_1705025 -2.117615 0.5494071
ILMN_1814316 3.986372 0.2911726
ILMN_2359168 -4.505037 0.6666667
ILMN_1731507 -8.630051 0.8524374
ILMN_1787689 8.647813 0.1501976
ILMN_1745607 -5.57816 0.7351779
ILMN_2136495 -0.8154742 0.4901186
ILMN_1668111 -5.976491 0.7536232

Total number of rows: 48803

Table truncated, full table size 1492 Kbytes.




Supplementary file Size Download File type/resource
GSM550352_4487653205_C_Raw.txt.gz 528.5 Kb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap