NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM550349 Query DataSets for GSM550349
Status Public on Aug 11, 2010
Title WB-H-3339
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 74
gender: Female
ethnicity: Caucasian
healthy control: ASLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 03, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -11.95848 0.9499341
ILMN_2055271 -3.590912 0.599473
ILMN_1736007 -11.48271 0.942029
ILMN_2383229 -3.061025 0.5652174
ILMN_1806310 1.122007 0.3517787
ILMN_1779670 -1.684792 0.486166
ILMN_2321282 6.314101 0.1818182
ILMN_1671474 -2.849674 0.5573123
ILMN_1772582 12.60214 0.09222662
ILMN_1735698 5.714237 0.1976285
ILMN_1653355 11.24013 0.1014493
ILMN_1717783 -4.032223 0.6350461
ILMN_1705025 -5.964529 0.7312253
ILMN_1814316 -6.038147 0.7338603
ILMN_2359168 -3.964642 0.627141
ILMN_1731507 -8.472713 0.8603426
ILMN_1787689 9.943804 0.113307
ILMN_1745607 -16.11415 0.9881423
ILMN_2136495 -12.54093 0.9552042
ILMN_1668111 -10.18722 0.9130435

Total number of rows: 48803

Table truncated, full table size 1485 Kbytes.




Supplementary file Size Download File type/resource
GSM550349_4487653192_K_Raw.txt.gz 529.4 Kb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap