NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM550334 Query DataSets for GSM550334
Status Public on Aug 11, 2010
Title WB-H-5556
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 43
gender: Male
ethnicity: Caucasian
healthy control: Still
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 03, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1809034 41.7986 0.005270092
ILMN_1660305 105.1033 0.001317523
ILMN_1792173 88.73737 0.001317523
ILMN_1762337 -8.333907 0.9249012
ILMN_2055271 11.80826 0.0513834
ILMN_1736007 -4.434366 0.7325428
ILMN_1814316 -3.143749 0.6192358
ILMN_2359168 -5.805965 0.8129117
ILMN_1731507 -1.646689 0.5177866
ILMN_1787689 2.406001 0.2806324
ILMN_1745607 -4.347549 0.7246377
ILMN_2136495 13.29723 0.04347826
ILMN_1668111 -2.857409 0.6034256
ILMN_2295559 -3.818683 0.6706192
ILMN_1735045 0.5022776 0.3833992
ILMN_1680754 -11.00937 0.9710145
ILMN_2375184 -1.218664 0.4940712
ILMN_1659452 3.334554 0.2371542
ILMN_1767388 2.095018 0.2964427
ILMN_1675204 -5.174362 0.7747036

Total number of rows: 48803

Table truncated, full table size 1492 Kbytes.




Supplementary file Size Download File type/resource
GSM550334_4433719012_J_Raw.txt.gz 528.4 Kb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap