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Sample GSM549521 Query DataSets for GSM549521
Status Public on Aug 11, 2010
Title WB-PSLE-5951
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 13
gender: Female
ethnicity: African American
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -9.018223 0.8722003
ILMN_2055271 5.011492 0.2305665
ILMN_1736007 -0.3373964 0.4321476
ILMN_2383229 -10.83255 0.9235837
ILMN_1806310 5.858817 0.1976285
ILMN_1779670 6.491246 0.1818182
ILMN_2321282 8.059277 0.1475626
ILMN_1671474 0.8226317 0.3833992
ILMN_1772582 -4.649706 0.7022398
ILMN_1735698 13.56532 0.06455863
ILMN_1653355 29.109 0.009222661
ILMN_1717783 -3.5032 0.6284585
ILMN_1705025 -5.701712 0.743083
ILMN_1814316 1.730211 0.3583663
ILMN_2359168 -5.749504 0.743083
ILMN_1731507 -12.95119 0.9604743
ILMN_1787689 -0.8366072 0.458498
ILMN_1745607 2.491858 0.3280632
ILMN_2136495 6.104234 0.1884058
ILMN_1668111 -10.53782 0.9156785

Total number of rows: 48803

Table truncated, full table size 1497 Kbytes.




Supplementary file Size Download File type/resource
GSM549521_4856076053_H_Raw.txt.gz 532.3 Kb (ftp)(http) TXT
Processed data included within Sample table

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