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Sample GSM549520 Query DataSets for GSM549520
Status Public on Aug 11, 2010
Title WB-PSLE-0582
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 14
gender: Female
ethnicity: African American
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 3.101454 0.2964427
ILMN_2055271 42.42389 0.003952569
ILMN_1736007 15.0484 0.06324111
ILMN_2383229 -3.409398 0.5928854
ILMN_1806310 7.87729 0.1607378
ILMN_1779670 8.232053 0.1541502
ILMN_2321282 -5.003808 0.6693017
ILMN_1671474 19.99025 0.04479579
ILMN_1772582 5.101394 0.2252964
ILMN_1735698 8.129127 0.1567852
ILMN_1653355 21.70737 0.03557312
ILMN_1717783 -5.7451 0.7061924
ILMN_1705025 3.59817 0.2806324
ILMN_1814316 -10.1587 0.8880106
ILMN_2359168 -1.796508 0.513834
ILMN_1731507 -4.472352 0.6442688
ILMN_1787689 23.28809 0.03293808
ILMN_1745607 3.566292 0.2819499
ILMN_2136495 -10.77893 0.9051383
ILMN_1668111 3.497294 0.2832675

Total number of rows: 48803

Table truncated, full table size 1499 Kbytes.




Supplementary file Size Download File type/resource
GSM549520_4856076053_G_Raw.txt.gz 532.4 Kb (ftp)(http) TXT
Processed data included within Sample table

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