NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM549508 Query DataSets for GSM549508
Status Public on Aug 11, 2010
Title WB-PSLE-5657
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 11
gender: Female
ethnicity: Caucasian
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -7.667944 0.8761528
ILMN_2055271 9.880412 0.09222662
ILMN_1736007 18.07484 0.02108037
ILMN_2383229 0.1585705 0.4242424
ILMN_1806310 4.350941 0.2226614
ILMN_1779670 8.322785 0.1119895
ILMN_2321282 5.276872 0.1884058
ILMN_1671474 7.511435 0.1277997
ILMN_1772582 -1.843364 0.5638999
ILMN_1735698 6.749376 0.1449275
ILMN_1653355 8.943758 0.1040843
ILMN_1717783 -0.5944493 0.4848485
ILMN_1705025 5.715614 0.1752306
ILMN_1814316 -15.42584 0.9960474
ILMN_2359168 -3.048417 0.6258234
ILMN_1731507 -4.843526 0.7338603
ILMN_1787689 1.350447 0.3610013
ILMN_1745607 -10.09897 0.9433465
ILMN_2136495 1.808277 0.3320158
ILMN_1668111 -6.271379 0.8221344

Total number of rows: 48803

Table truncated, full table size 1468 Kbytes.




Supplementary file Size Download File type/resource
GSM549508_4856076044_B_Raw.txt.gz 527.1 Kb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap