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Sample GSM549504 Query DataSets for GSM549504
Status Public on Aug 11, 2010
Title WB-PSLE-5622
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 11
gender: Female
ethnicity: African American
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -1.219461 0.5428195
ILMN_2055271 15.63976 0.03162055
ILMN_1736007 5.080156 0.2187088
ILMN_2383229 8.782625 0.1040843
ILMN_1806310 17.73034 0.02766798
ILMN_1779670 -2.092906 0.5810277
ILMN_2321282 3.690276 0.2779974
ILMN_1671474 4.574927 0.2450593
ILMN_1772582 0.7798792 0.4347826
ILMN_1735698 13.31787 0.03820817
ILMN_1653355 25.08344 0.01054018
ILMN_1717783 -2.390326 0.5928854
ILMN_1705025 -1.086249 0.5309618
ILMN_1814316 -3.538163 0.6521739
ILMN_2359168 -9.69403 0.9090909
ILMN_1731507 -5.886288 0.7812912
ILMN_1787689 9.023489 0.0974967
ILMN_1745607 -13.71615 0.9749671
ILMN_2136495 -5.655655 0.7760211
ILMN_1668111 1.240768 0.4057971

Total number of rows: 48803

Table truncated, full table size 1482 Kbytes.




Supplementary file Size Download File type/resource
GSM549504_4856076024_J_Raw.txt.gz 527.9 Kb (ftp)(http) TXT
Processed data included within Sample table

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