NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM549500 Query DataSets for GSM549500
Status Public on Aug 11, 2010
Title WB-PSLE-2408
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 14
gender: Female
ethnicity: Hispanic
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -8.259859 0.9235837
ILMN_2055271 20.22748 0.01449275
ILMN_1736007 -2.311248 0.6152833
ILMN_2383229 1.647363 0.3636364
ILMN_1806310 1.391234 0.3794466
ILMN_1779670 7.979879 0.09090909
ILMN_2321282 1.924876 0.3372859
ILMN_1671474 4.982828 0.1660079
ILMN_1772582 -2.781817 0.6534914
ILMN_1735698 7.121919 0.1054018
ILMN_1653355 31.14779 0.002635046
ILMN_1717783 -8.554857 0.9301713
ILMN_1705025 4.881918 0.168643
ILMN_1814316 -7.20067 0.8932806
ILMN_2359168 4.751188 0.1765481
ILMN_1731507 -6.298551 0.8498024
ILMN_1787689 1.249784 0.3847167
ILMN_1745607 8.25901 0.08827405
ILMN_2136495 -5.122999 0.8036891
ILMN_1668111 -2.274032 0.6139657

Total number of rows: 48803

Table truncated, full table size 1471 Kbytes.




Supplementary file Size Download File type/resource
GSM549500_4856076024_E_Raw.txt.gz 525.7 Kb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap