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Sample GSM549498 Query DataSets for GSM549498
Status Public on Aug 11, 2010
Title WB-PSLE-7469
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 18
gender: Female
ethnicity: African American
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 2.777868 0.2700922
ILMN_2055271 4.170423 0.2002635
ILMN_1736007 -1.00582 0.5256917
ILMN_2383229 -17.03373 0.9986825
ILMN_1806310 -7.028426 0.8827404
ILMN_1779670 2.944459 0.259552
ILMN_2321282 -8.731843 0.9380764
ILMN_1671474 4.022253 0.2147563
ILMN_1772582 -8.089019 0.9262187
ILMN_1735698 3.812212 0.2213439
ILMN_1653355 19.76759 0.01054018
ILMN_1717783 -4.671257 0.7667984
ILMN_1705025 6.56105 0.1277997
ILMN_1814316 4.752914 0.1752306
ILMN_2359168 -2.60843 0.6429513
ILMN_1731507 0.8098933 0.3873518
ILMN_1787689 2.691234 0.2727273
ILMN_1745607 -3.611073 0.7075099
ILMN_2136495 -3.445262 0.6982872
ILMN_1668111 -7.490849 0.9051383

Total number of rows: 48803

Table truncated, full table size 1473 Kbytes.




Supplementary file Size Download File type/resource
GSM549498_4856050053_L_Raw.txt.gz 526.3 Kb (ftp)(http) TXT
Processed data included within Sample table

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