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Sample GSM549494 Query DataSets for GSM549494
Status Public on Aug 11, 2010
Title WB-PSLE-0683
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 16
gender: Female
ethnicity: Hispanic
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -6.784819 0.8761528
ILMN_2055271 0.379281 0.4268775
ILMN_1736007 1.83374 0.3372859
ILMN_2383229 -3.235471 0.6890646
ILMN_1806310 -4.789874 0.7812912
ILMN_1779670 4.076409 0.2226614
ILMN_2321282 -3.583177 0.7088274
ILMN_1671474 12.53631 0.03820817
ILMN_1772582 -5.545348 0.8155468
ILMN_1735698 9.946109 0.06192358
ILMN_1653355 19.36626 0.009222661
ILMN_1717783 -2.160677 0.6047431
ILMN_1705025 2.511286 0.2977602
ILMN_1814316 -0.03420239 0.455863
ILMN_2359168 4.691837 0.1923584
ILMN_1731507 6.088882 0.1528327
ILMN_1787689 -3.116693 0.6719368
ILMN_1745607 -6.575269 0.8695652
ILMN_2136495 -5.191815 0.7971014
ILMN_1668111 -7.77788 0.9130435

Total number of rows: 48803

Table truncated, full table size 1466 Kbytes.




Supplementary file Size Download File type/resource
GSM549494_4856050053_H_Raw.txt.gz 525.0 Kb (ftp)(http) TXT
Processed data included within Sample table

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