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Sample GSM549478 Query DataSets for GSM549478
Status Public on Aug 11, 2010
Title WB-PSLE-7393
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 13
gender: Female
ethnicity: African American
illness: PSLE
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 0.4261274 0.4400527
ILMN_2055271 -4.34292 0.7061924
ILMN_1736007 15.45435 0.03293808
ILMN_2383229 2.16681 0.3201581
ILMN_1806310 1.324688 0.3833992
ILMN_1779670 -2.392102 0.5902503
ILMN_2321282 12.76485 0.04874835
ILMN_1671474 8.7852 0.09222662
ILMN_1772582 6.514078 0.140975
ILMN_1735698 10.27327 0.06719368
ILMN_1653355 23.938 0.01185771
ILMN_1717783 -5.464067 0.7562582
ILMN_1705025 13.88054 0.03820817
ILMN_1814316 1.460568 0.3715415
ILMN_2359168 -7.640722 0.8550724
ILMN_1731507 -7.530921 0.8511199
ILMN_1787689 2.697074 0.3030303
ILMN_1745607 0.9325859 0.4137022
ILMN_2136495 -6.893472 0.8366271
ILMN_1668111 -2.178067 0.5770751

Total number of rows: 48803

Table truncated, full table size 1517 Kbytes.




Supplementary file Size Download File type/resource
GSM549478_4856050050_D_Raw.txt.gz 531.1 Kb (ftp)(http) TXT
Processed data included within Sample table

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