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Sample GSM549466 Query DataSets for GSM549466
Status Public on Aug 11, 2010
Title WB-Staph-2741
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 12
gender: Male
ethnicity: Caucasian
illness: Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 1.607365 0.3188406
ILMN_2055271 5.040298 0.1765481
ILMN_1736007 -0.4774223 0.4479578
ILMN_2383229 -2.647095 0.5968379
ILMN_1806310 -9.963817 0.9776021
ILMN_1779670 -2.849911 0.6166008
ILMN_2321282 7.532977 0.1212121
ILMN_1671474 -7.349106 0.9077734
ILMN_1772582 4.761823 0.1831357
ILMN_1735698 2.704958 0.2674572
ILMN_1653355 3.084841 0.2490119
ILMN_1717783 -2.529125 0.5862978
ILMN_1705025 -4.868251 0.7562582
ILMN_1814316 -9.493489 0.969697
ILMN_2359168 -4.873567 0.7562582
ILMN_1731507 5.878691 0.1594203
ILMN_1787689 7.009985 0.1277997
ILMN_1745607 -3.03742 0.6324111
ILMN_2136495 -14.49401 0.9986825
ILMN_1668111 -9.254705 0.9670619

Total number of rows: 48803

Table truncated, full table size 1469 Kbytes.




Supplementary file Size Download File type/resource
GSM549466_4676163067_E_Raw.txt.gz 527.6 Kb (ftp)(http) TXT
Processed data included within Sample table

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