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Sample GSM549465 Query DataSets for GSM549465
Status Public on Aug 11, 2010
Title WB-Staph-9562
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 11
gender: Male
ethnicity: African American
illness: Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -3.851244 0.6613966
ILMN_2055271 13.42659 0.05928854
ILMN_1736007 -0.1600043 0.3873518
ILMN_2383229 -0.5326737 0.4137022
ILMN_1806310 -3.0509 0.5876153
ILMN_1779670 -7.779719 0.9064559
ILMN_2321282 10.92903 0.085639
ILMN_1671474 3.047355 0.2424242
ILMN_1772582 -2.262912 0.5362319
ILMN_1735698 -1.417574 0.4664032
ILMN_1653355 8.646152 0.1238472
ILMN_1717783 -2.352104 0.5401844
ILMN_1705025 -3.855953 0.6613966
ILMN_1814316 -10.41014 0.9789196
ILMN_2359168 -9.069756 0.9512516
ILMN_1731507 0.3374614 0.3530962
ILMN_1787689 -2.317686 0.5388669
ILMN_1745607 -0.8435196 0.4295125
ILMN_2136495 -12.76969 0.9947299
ILMN_1668111 -7.92238 0.9130435

Total number of rows: 48803

Table truncated, full table size 1490 Kbytes.




Supplementary file Size Download File type/resource
GSM549465_4676163067_D_Raw.txt.gz 532.0 Kb (ftp)(http) TXT
Processed data included within Sample table

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