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Sample GSM549455 Query DataSets for GSM549455
Status Public on Aug 11, 2010
Title WB-Staph-9552
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 8
gender: Female
ethnicity: African American
illness: Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -1.604684 0.4901186
ILMN_2055271 22.35913 0.02239789
ILMN_1736007 -12.33906 0.9683794
ILMN_2383229 -0.5007416 0.4334651
ILMN_1806310 9.024441 0.1488801
ILMN_1779670 -3.552589 0.6086956
ILMN_2321282 4.518785 0.2555995
ILMN_1671474 -2.738014 0.5454546
ILMN_1772582 18.18332 0.04084321
ILMN_1735698 -7.99192 0.8326746
ILMN_1653355 15.65704 0.05797102
ILMN_1717783 -9.808042 0.9051383
ILMN_1705025 -1.061184 0.4611331
ILMN_1814316 3.781181 0.2714097
ILMN_2359168 -2.674268 0.5428195
ILMN_1731507 4.947042 0.2463768
ILMN_1787689 0.1623435 0.3965744
ILMN_1745607 -7.831285 0.828722
ILMN_2136495 -12.13109 0.9631094
ILMN_1668111 -7.172839 0.7918314

Total number of rows: 48803

Table truncated, full table size 1479 Kbytes.




Supplementary file Size Download File type/resource
GSM549455_4676163064_E_Raw.txt.gz 530.8 Kb (ftp)(http) TXT
Processed data included within Sample table

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