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Sample GSM549450 Query DataSets for GSM549450
Status Public on Aug 11, 2010
Title WB-Staph-5040
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 11
gender: Male
ethnicity: African American
illness: Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 1.061612 0.3794466
ILMN_2055271 14.93985 0.04479579
ILMN_1736007 -1.016168 0.5098814
ILMN_2383229 -7.704185 0.8642951
ILMN_1806310 1.274739 0.3675889
ILMN_1779670 -9.216575 0.9183136
ILMN_2321282 0.7526779 0.397892
ILMN_1671474 -0.5366337 0.4795784
ILMN_1772582 -3.950288 0.6837944
ILMN_1735698 5.635864 0.1805007
ILMN_1653355 11.02325 0.07773386
ILMN_1717783 -2.865997 0.6205534
ILMN_1705025 -1.290127 0.5296443
ILMN_1814316 -5.513748 0.7641634
ILMN_2359168 -2.558166 0.5928854
ILMN_1731507 5.360308 0.1844532
ILMN_1787689 4.735595 0.2042161
ILMN_1745607 -5.937091 0.7839262
ILMN_2136495 11.06972 0.07773386
ILMN_1668111 0.9245186 0.3873518

Total number of rows: 48803

Table truncated, full table size 1483 Kbytes.




Supplementary file Size Download File type/resource
GSM549450_4676163060_K_Raw.txt.gz 528.6 Kb (ftp)(http) TXT
Processed data included within Sample table

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