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Sample GSM549449 Query DataSets for GSM549449
Status Public on Aug 11, 2010
Title WB-Staph-5068
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 2
gender: Female
ethnicity: Hispanic
illness: Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -5.75787 0.8142292
ILMN_2055271 1.211072 0.3610013
ILMN_1736007 5.999455 0.1515152
ILMN_2383229 -6.555763 0.8577075
ILMN_1806310 -3.42622 0.7035573
ILMN_1779670 -3.29048 0.6916996
ILMN_2321282 5.188375 0.1791831
ILMN_1671474 -2.007443 0.5928854
ILMN_1772582 6.628781 0.1317523
ILMN_1735698 -6.855294 0.8722003
ILMN_1653355 5.087721 0.1831357
ILMN_1717783 -4.354423 0.7483531
ILMN_1705025 3.549534 0.2450593
ILMN_1814316 -4.995001 0.7747036
ILMN_2359168 -2.763081 0.6613966
ILMN_1731507 -1.44714 0.5559947
ILMN_1787689 3.269861 0.2503294
ILMN_1745607 -1.657201 0.5731225
ILMN_2136495 -5.781776 0.8168643
ILMN_1668111 -7.927714 0.9196311

Total number of rows: 48803

Table truncated, full table size 1475 Kbytes.




Supplementary file Size Download File type/resource
GSM549449_4676163060_J_Raw.txt.gz 527.2 Kb (ftp)(http) TXT
Processed data included within Sample table

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