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Sample GSM549431 Query DataSets for GSM549431
Status Public on Aug 11, 2010
Title WB-Staph-5839
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 4
gender: Female
ethnicity: Hispanic
illness: Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -5.039109 0.7628459
ILMN_2055271 10.26041 0.07641634
ILMN_1736007 1.068888 0.3491436
ILMN_2383229 -3.2117 0.6363636
ILMN_1806310 -10.00564 0.9776021
ILMN_1779670 -3.474463 0.6561265
ILMN_2321282 6.549525 0.1330698
ILMN_1671474 -0.3710257 0.4413702
ILMN_1772582 -8.537674 0.9538867
ILMN_1735698 1.377175 0.3306983
ILMN_1653355 15.17292 0.03557312
ILMN_1717783 -4.174123 0.6890646
ILMN_1705025 1.109302 0.3465086
ILMN_1814316 -1.123438 0.4967062
ILMN_2359168 -4.096857 0.685112
ILMN_1731507 -2.949109 0.6166008
ILMN_1787689 2.434276 0.2687747
ILMN_1745607 -0.4953875 0.4479578
ILMN_2136495 2.446516 0.2687747
ILMN_1668111 -5.723412 0.8076416

Total number of rows: 48803

Table truncated, full table size 1470 Kbytes.




Supplementary file Size Download File type/resource
GSM549431_4676163047_J_Raw.txt.gz 527.3 Kb (ftp)(http) TXT
Processed data included within Sample table

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