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Sample GSM549430 Query DataSets for GSM549430
Status Public on Aug 11, 2010
Title WB-Staph-5827
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 17
gender: Male
ethnicity: Hispanic
illness: Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -1.191805 0.4993412
ILMN_2055271 12.96309 0.05665349
ILMN_1736007 -2.660348 0.5823452
ILMN_2383229 -5.781188 0.8208169
ILMN_1806310 -3.921052 0.6732543
ILMN_1779670 -6.348863 0.8537549
ILMN_2321282 16.00046 0.02898551
ILMN_1671474 0.4402458 0.3913043
ILMN_1772582 -1.020289 0.4888011
ILMN_1735698 7.719276 0.1172596
ILMN_1653355 13.09124 0.05665349
ILMN_1717783 -0.9981439 0.4888011
ILMN_1705025 -5.923004 0.828722
ILMN_1814316 -4.98137 0.7615283
ILMN_2359168 -7.009884 0.8787879
ILMN_1731507 -0.6115838 0.4677207
ILMN_1787689 -1.700596 0.5283267
ILMN_1745607 0.8760645 0.3623188
ILMN_2136495 -0.8507844 0.483531
ILMN_1668111 -10.74648 0.9802371

Total number of rows: 48803

Table truncated, full table size 1471 Kbytes.




Supplementary file Size Download File type/resource
GSM549430_4676163047_I_Raw.txt.gz 527.6 Kb (ftp)(http) TXT
Processed data included within Sample table

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