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Sample GSM549425 Query DataSets for GSM549425
Status Public on Aug 11, 2010
Title WB-Staph-1345
Sample type RNA
 
Source name Human whole blood
Organism Homo sapiens
Characteristics age: 15
gender: Male
ethnicity: African American
illness: Staph
Extracted molecule total RNA
Extraction protocol Ambion Temput Isolation kit
Label biotin
Label protocol Biotynlated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion.
 
Hybridization protocol Hybridized 12-Sample Beadchip according to manufacturer protocol
Scan protocol SentrixScanVersion 2.3.0.13 (This information is in the .XML file)
Description Whole blood was collected in Tempus tube
Data processing The data were analyzed using BeadStudio version 1.5.1.3 using the average chip normalization method.
 
Submission date Jun 02, 2010
Last update date Aug 11, 2010
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (2)
GSE19491 Blood Transcriptional Profiles in Human Active and Latent Tuberculosis
GSE22098 Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases

Data table header descriptions
ID_REF ID
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 -2.557462 0.6284585
ILMN_2055271 6.326822 0.1106719
ILMN_1736007 -2.990638 0.657444
ILMN_2383229 1.580334 0.28722
ILMN_1806310 -5.494002 0.8511199
ILMN_1779670 -0.7587186 0.4664032
ILMN_2321282 17.52112 0.02503294
ILMN_1671474 7.919132 0.09090909
ILMN_1772582 -0.9329044 0.4953887
ILMN_1735698 -0.07268462 0.4110672
ILMN_1653355 6.976628 0.1014493
ILMN_1717783 -0.4762833 0.4505929
ILMN_1705025 2.762384 0.2358366
ILMN_1814316 -0.04131484 0.4097497
ILMN_2359168 -1.139113 0.5046113
ILMN_1731507 6.300261 0.1106719
ILMN_1787689 4.180099 0.1778656
ILMN_1745607 -1.528418 0.5349144
ILMN_2136495 5.364767 0.1462451
ILMN_1668111 -8.838074 0.9631094

Total number of rows: 48803

Table truncated, full table size 1480 Kbytes.




Supplementary file Size Download File type/resource
GSM549425_4676163047_D_Raw.txt.gz 528.7 Kb (ftp)(http) TXT
Processed data included within Sample table

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